Diversity and potential utilization of macrofungi in the riparian area of the Samin River, Central Java, Indonesia
Main Article Content
Abstract
Abstract. Putri RRA, Fajri R, Rahmadhani SE, Salsabila S, Himawan W, Septiasari A, Yap CK, Setyawan AD. 2025. Diversity and potential utilization of macrofungi in the riparian area of the Samin River, Central Java, Indonesia. Intl J Bonorowo Wetlands 15: 86-102. Macrofungi play essential roles in decomposition, nutrient cycling, and ecosystem functioning, yet their diversity in the riparian habitats of Java (Indonesia) remains poorly documented. This study provides a comprehensive assessment of macrofungal communities along the Samin River, Central Java, covering upstream, middle, and downstream segments. Surveys were conducted in March-April 2024 using belt-transect observations (10 m × 100 m per station) across six locations. All encountered fruiting bodies were recorded, photographed, and identified based on macromorphological and microscopical features, with substrate type categorized into weathered logs (W), leaf litter (L), soil (S), tree bark (T), and animal dung (A). Diversity indices (Shannon–Wiener H', Simpson D, Margalef R, and Evenness E) and substrate distributions were analyzed to evaluate spatial patterns in community structure. A total of 98 macrofungal species belonging to 38 families, 13 orders, and two phyla (Ascomycota and Basidiomycota) were confirmed, with Basidiomycota predominating. The most species-rich families were Mycenaceae, Polyporaceae, Marasmiaceae, and Agaricaceae. Species richness was comparable between the upstream and middle sections (41 species each), but the upstream section exhibited the highest ecological diversity as reflected by diversity indices (H' = 3.03, R = 6.40), whereas downstream areas showed lower diversity values (H' = 2.29, R = 3.88). These patterns reflect environmental gradients in humidity, canopy cover, light intensity, and substrate availability along the river continuum. Weathered logs were the most frequently colonized substrate, supporting more than half of all species, including ecologically important lignicolous taxa (e.g., Xylaria, Crepidotus, Cerrena, Schizophyllum). Several species displayed multi-substrate flexibility (e.g., Marasmius elegans), indicating functional adaptability to riparian microhabitats. Edible and medicinal taxa—such as Auricularia auricula-judae, Termitomyces sp., and Schizophyllum commune —highlight the biocultural and biotechnological value of riparian macrofungi. The Samin River corridor serves as a biodiversity reservoir that merits greater conservation attention and provides promising opportunities for sustainable fungal utilization.
Article Details
Issue
Section

This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
The journal is committed to free-open access that does not charge readers or their institutions for access. Readers are entitled to read, download, copy, distribute, print, search, or link to the full texts of articles, as long as not for commercial purposes. The license type is CC-BY-NC-SA.
References
Abdalla RR, Ahmed AI, Abdalla AI, Abdelmaboud OA, Khiery NTMA, Elriah NDA, Saeed MSA. 2016. Some wild edible and medicinal mushroom species at Khartoum and Sinnar States-Sudan. J Microb Biochem Technol 8 (6): 503-506.
Al-Momany AM. 2025. Identification and distribution of wild toxic Inocybe spp., and edible Tricholoma mushrooms in Jordan. Jordan J Agric Sci 21(1): 5-15. DOI: 10.35516/jjas.v21i1.2001.
Amaral-Machado L, Oliveira WN, Moreira-Oliveira SS, Pereira DT, Alencar EN, Tsapis N, Egito EST. 2020. Use of natural products in asthma treatment. Evid Based Compl Altern Med 2020: 1-35. DOI: 10.1155/2020/1021258.
Armadhan WS, Sari SP, Aji MYMB, Permatasari DP, Amalia BW, Berlin GE, Aszar AS, Indrawan M, Pradhan P, Setyawan AD. 2023. The macrofungal diversity and its potential from the karst forest of Kalipoh Village, Kebumen District, Indonesia. Asian J For 7(2): 98-105. DOI: 10.13057/asianjfor/r070204.
Bässler C, Heilmann-Clausen J, Karasch P, Brandl R, Halbwachs H. 2015. Ectomycorrhizal fungi have larger fruit bodies than saprotrophic fungi. Fungal Ecol 17: 205-212. DOI: 10.1016/j.funeco.2014.06.005.
Benjamin DR. 1995. Mushrooms: Poisons and Panaceas. A Handbook for Naturalists, Mycologists and Physicians. W.H. Freeman and Company, New York.
Beug MW, Bessette AE, Bessette AR. 2014. Ascomycete Fungi of North America: A Mushroom Reference Guide. University of Texas Press, Austin.
Bibi S, Wang ZL, Lin C, Min SH, Cheng CY. 2023. Two-stage cultivation strategies for optimal production of Ganoderma pellets with potential application in the vegan food industry. J Food Sci Technol 60 (6): 1793-1802. DOI: 10.1007/s13197-023-05719-x
BMKG. 2025. Prediksi Musim Kemarau Tahun 2025 di Indonesia. bmkg.go.id/iklim/prediksi-musim/prediksi-musim-kemarau-tahun-2025-di-indonesia. [Indonesian]
Boa E. 2004. Wild Edible Fungi: A Global Overview of Their Use and Importance to People. Food and Agriculture Organization, Rome.
Boddy L, Heilmann-Clausen J. 2008. Basidiomycete community development in temperate angiosperm wood. Br Mycol Soc Symp Ser 28: 211-237. DOI: 10.1016/S0275-0287(08)80014-8.
Cohen R, Persky L, Hadar Y. 2002. Biotechnological applications and potential of wood-degrading mushrooms of the genus Pleurotus. Appl Microbiol Biotechnol 58: 582-594. DOI: 10.1007/s00253-002-0930-y
Dai B, Rattanarithikul R, Lumyong P, Lumyong S. 2006. Ectomycorrhizal fungi in dry and wet dipterocarp forests in northern Thailand: diversity and use as food. In: Proceedings of the National Seminar on Agriculture. Malaysian Agricultural Research and Development Institute (MARDI), Kuala Lumpur.
Dell B, Malajczuk N, Xu D. 2020. Macrofungal assemblages of tropical riparian zones in Southeast Asia. Mycoscience 61(4): 195-205. DOI: 10.1016/j.myc.2020.03.004.
Elkhateeb W, Daba GM. 2021. Fungi over fungi: Endophytic fungi associated with mushroom fruiting bodies and lichens. J Pharm Pharm Res 4: 1-4. DOI: 10.31579/2693-7247/028.
Fawwaz DA, Warasari T, Nurhaliza Y, Sucitawati Y, Jayanti ET, Harisanti BM, Primawati SN. 2024. Diversity of fungi in the Mount Rinjani National Park Kembang Kuning Resort, Jeruk Manis Village, Sikur District, East Lombok District. Ecobios J Environ Sci 1 (1): 37-46. DOI: 10.71024/ecobios/2024/v1i1/15.
Feng T, Li ZH, Yin X, Dong ZJ, Wang GQ, Li XY, Li Y, Liu JK. 2013. New benzene derivatives from cultures of ascomycete Daldinia concentrica. Nat Prod Bioprospect 3: 150-153. DOI: 10.1007/s13659-013-0048-1.
Fikri AHN, Rosyid CHR, Mahajarifar RZ, Fadlun F, Noverita N. 2023. Keanekaragaman jamur makro dan potensinya di Kampung Citlahab, Balai Taman Nasional Gunung Halimun Salak. Al-Kauniyah: Jurnal Biologi 16 (1): 76-88. DOI: 10.15408/kauniyah.v16i1.20482. [Indonesian]
Fischer C, Damm C, Foeckler F, Gelhaus M, Gerstner L, Harris RMB, Hoffmann TG, Iwanowski J, Kasperidus H, Mehl D, Podschun SA, Rumm A, Stammel B, Scholz M. 2019. The "Habitat Provision" Index for assessing floodplain biodiversity and restoration potential as an ecosystem service-method and application. Front Ecol Evol 7: 483. DOI: 10.3389/fevo.2019.00483.
Ghosh S, Sett S, Saha R, Roy A, Acharya K. 2021. Comparative phytochemical screening and antioxidant properties of infusion, decoction and hydroalcoholic extracts of wood ear mushrooms Auricularia delicata and Auricularia mesenterica. Indian Phytopathol 74: 113-121. DOI: 10.1007/s42360-020-00301-3
Gilbert GS, Sousa WP. 2002. Host specialization among wood-decay polypore fungi in a Caribbean mangrove forest. Biotropica 34: 396-404. DOI: 10.1111/j.1744-7429.2002.tb00553.x.
Guerin-Laguette A, Cummings N, Butler RC, Willows A, Hesom-Williams N, Li S, Wang Y. 2014. Lactarius deliciosus and Pinus radiata in New Zealand: Towards the development of innovative gourmet mushroom orchards. Mycorrhiza 24: 511-523. DOI: 10.1007/s00572-014-0578-4.
Huang X, Shi L, Lin Y, Zhang C, Liu P, Zhang R, Chen Q, Ouyang X, Gao Y, Wang Y, Sun T. 2023. Pycnoporus sanguineus polysaccharides as reducing agents: Self-assembled composite nanoparticles for integrative diabetic wound therapy. Intl J Nanomed 18: 6021-6035. DOI: 10.2147/IJN.S427055.
Hyde KD, Al-Hatmi AM, Andersen B et al. 2018. The world's ten most feared fungi. Fungal Divers 93: 161-194. DOI: 10.1007/s13225-018-0413-9.
Karunarathna SC, Patabendige NM, Hapuarachchi KK, Promputtha I. 2025. Exploring the health benefits of Ganoderma: Antimicrobial properties and mechanisms of action. Front Cell Infect Microbiol 15: 1535246. DOI: 10.3389/fcimb.2025.1535246.
Kibby G. 2006. Philip's Guide to Mushrooms and Toadstools of Britain and Northern Europe. Philip's, London.
Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2008. Dictionary of the Fungi. 10th ed. CAB International, Wallingford.
Kumar A, Kumar M, Ali S, Lal SB, Sinha MP. 2019. Antipathogenic efficacy of Indian edible macrofungi Dacryopinax spathularia (Schwein) and Schizophyllum commune (Fries) against some human pathogenic bacteriae. J Emerg Technol Innov Res 6: 695-704.
Kumar R, Tapwal A, Pandey S, Rishi R. 2013.Fungal diversity associated with bamboo litter from Bambusetum of Rain Forest Research Institute, Northeast India. Biodiversitas 14: 79-88. DOI: 10.13057/biodiv/d140205.
Largent DL. 1977. How to Identify Mushrooms to Genus III: Microscopic Features. Mad River Press, US.
Le THY, Tran HT, Dong THA, Nguyen ML, Vu DN, Trinh TK. 2022. Antimicrobial and antioxidant activity of the polypore mushroom Lentinus arcularius (Agaricomycetes) isolated in Vietnam. Intl J Med Mushrooms 24 (3): 15-23. DOI: 10.1615/IntJMedMushrooms.2022042702
Lesage-Meessen L, Haon M, Uzan E, Levasseur A, Piumi F, Navarro D, Taussac S, Favel A, Lomascolo A. 2011. Phylogeographic relationships in the polypore fungus Pycnoporus inferred from molecular data. FEMS Microbiol Lett 325: 37-48. DOI: 10.1111/j.1574-6968.2011.02412.x.
Li H, Guo J, Karunarathna SC, Ye L, Xu J, Hyde KD, Mortimer PE. 2018. Native forests have a higher diversity of macrofungi than comparable plantation forests in the Greater Mekong Subregion. Forests 9 (7): 402. DOI: 10.3390/f9070402.
Li H, Zhang Y, Zhang H, Zhou J, Li Z, Yin Y, He Q, Jiang S, Zhang Y, Yuan Y, Lang N, Cheng B, Zhong J, Yuan M, Liu Z, Sun C. 2025. Mushroom poisoning outbreaks-China, 2024. China CDC Wkly 7: 645-649. DOI: 10.46234/ccdcw2025.106.
Lodge D, Cantrell S. 2023. The roles of macrofungi in humid tropical forests and the effects of disturbance. In: Hyde KD, Lumyong S, Xu J (eds). Fungal Diversity in the Tropics. CRC Press, Boca Raton. DOI: 10.1201/9781003429272-3.
Lodge JD, Ammirati FJ, O'Dell ET, Mueller GM. 2004. Collecting and describing macrofungi. In: Mueller GM, Bills GF, Foster MS (eds). Biodiversity of Fungi: Inventory and Monitoring Methods. Elsevier Academic Press, Burlington.
Madsen AM, Crook B. 2021. Occupational exposure to fungi on recyclable paper pots and growing media and associated health effects-A review of the literature. Sci Total Environ 788: 147-158. DOI: 10.1016/j.scitotenv.2021.147832.
Magurran AE. 1998. Ecological Diversity and Its Measurement. Princeton University Press, Princeton.
Mahardhika WA, Utami AB, Lunggani AT, Putra IP. 2022. Eksplorasi jamur di Desa Kedung Pacul, Klaten, dan potensi pemanfaatannya. Bioma: Berkala Ilmiah Biologi 24 (1): 8-23.
DOI: 10.14710/bioma.24.1.8-23. [Indonesian]
Mayra MT, Siagian SLS, Putri AN, Khairani D, Santoso GZS, Abdurrahman NH, Rhama MD, Mahardhika WA, Sari OY, Putra IP. 2024. Catatan jamur di sekitar hutan Danau Situgede (Bogor) dan potensinya sebagai sumber pangan. Jurnal Jeumpa 11 (2): 226-240. DOI: 10.33059/jj.v11i2.10150. [Indonesian]
McKnight KH, McKnight VB. 1987. Peterson’s Field Guide to Mushrooms. Houghton Mifflin Company, New York.
Miles PG, Chang ST. 2004. Mushrooms: Cultivation, Nutritional Value, Medicinal Effect, and Environmental Impact. 2nd ed. CRC Press, Boca Raton.
Muchane M, Terer T, Waithaka K. 2021. Macro-fungi community of Lake Ol Bolossat Basin and associated riparian ecosystems in Central, Kenya. Intl J Nat Resour Ecol Manag 6: 6-15. DOI: 10.11648/j.ijnrem.20210601.13.
Mueller GM, Bills GF, Foster MS. 2004. Biodiversity of Fungi: Inventory and Monitoring Methods. Elsevier Academic Press, Burlington.
Naiman RJ, Décamps H. 1997. The ecology of interfaces: Riparian zones. Ann Rev Ecol Syst 28: 621-658. DOI: 10.1146/annurev.ecolsys.28.1.621.
Nurzahra Vy, Muzazzinah M, Indrowati M. 2025. Diversity of macrofungi (Ascomycota and Basidiomycota) in the Banyak Mountain Forest Area, Sragen District, Indonesia. Nusantara Biosci 17 (1): 39-48. DOI: 10.13057/nusbiosci/n170105
Odum EP. 1971. Fundamental of Ecology. WE Sounders, Philadelphia.
On JO, Bassey GA, Agba MIO, Markson AA. 2021. Amino acids composition of some wild edible mushrooms from Southern Cross River State, Nigeria. Asian J Biol 12 (2): 24-32. DOI: 10.9734/ajob/2021/v12i230159.
Ovaskainen O, Schigel D, Ali-Kovero H, Auvinen P, Paulin L, Norden B, Norden J. 2013. Combining high-throughput sequencing with fruit body surveys reveals contrasting life-history strategies in fungi. ISME J 7 (9): 1696-1709. DOI: 10.1038/ismej.2013.61.
Patocka J, Wu R, Nepovimova E, Valis M, Wu W, Kuca K. 2021. Chemistry and toxicology of major bioactive substances in Inocybe mushrooms. Intl J Mol Sci 22(4): 1-13. DOI: 10.3390/ijms22042218.
Pielou EC. 1966. The measurement of diversity in different types of biological collections. J Theor Biol 13: 131-144.
Putra IP. 2020. Record on macroscopic fungi at IPB University Campus Forest: description and potential utilization. Indones J Sci Educ 4(1): 1-11. DOI: 10.31003/ijose.v4i1.2180.
Rahmi NA, Hutami AT, Hasrida HM, Syahidah RN, Nurazizah S, Radiastuti N, Fifendy M. 2021. Inventarisasi keragaman dan potensi jamur makro di Taman Margasatwa Ragunan, Jakarta Selatan. Prosiding Seminar Nasional Biologi 1 (2): 554-562. DOI: 10.24036/prosemnasbio/vol1/333. [Indonesian]
Ryoo R, Lee H. 2024. In vitro anti-influenza virus (H1N1) activity of eleven species of Korean medicinal mushrooms. Res Square 2024: 1-16. DOI: 10.21203/rs.3.rs-3848264/v1.
Shannon CE, Weaver W. 1963. The Mathematical Theory of Communication. University of Illinois Press, Urbana.
Shigyo N, Hirao T. 2021. Saprotrophic and ectomycorrhizal fungi exhibit contrasting richness patterns along elevational gradients in cool-temperate montane forests. Fungal Ecol 50: 101036. DOI: 10.1016/j.funeco.2020.101036.
Simpson EH. 1949. Measurement of diversity. Nature 163 (4148): 688. DOI: 10.1038/163688a0.
Sitotaw R, Lulekal E, Abate D. 2020. Ethnomycological study of edible and medicinal mushrooms in Menge District, Asossa Zone, Benshangul Gumuz Region, Ethiopia. J Ethnobiol Ethnomed 16: 1-14. DOI: 10.1186/s13002-020-00361-9.
Sondej D, Pigoń-Zając D, Jaszek M, Stefaniuk D, Matuszewska A, Bielak K, Opielak G, Małecka-Massalska T, Rahnama-Hezavah M, Prendecka-Wróbel M. 2025. Is laccase from medicinal mushroom Cerrena unicolor cytotoxic to colon cancer cell line CT-26? PLoS One 20(5): e0322211. DOI: 10.1371/journal.pone.0322211.
Srivastava M, Kumari M, Karn SK, Bhambri A, Mahale VG, Mahale S. 2024. Submerged cultivation and phytochemical analysis of medicinal mushrooms (Trametes sp.). Front Fungal Biol 5: 1-16. DOI: 10.3389/ffunb.2024.1414349.
Staita K, Khmaissa M, Akrout I, Greff S, Ghariani B, Turbé-Doan A, Lomascolo A, Albert Q, Faulds CB, Sciara G, Mechichi HZ, Record E, Mechichi T. 2024. Biotransformation of the fluoroquinolone antibiotic levofloxacin by the free and immobilized secretome of Coriolopsis gallica. J Fungi 10 (12): 1-19. DOI: 10.3390/jof10120861.
Stamets P. 2005. Mycelium Running: How Mushrooms Can Help Save the World. Ten Speed Press, Berkeley.
Teixeira-Silva M, Silva C, Santos G, Carvalho C, Cortez V, Silveira M. 2024. Macrofungal species richness and composition of Acre State, Amazon, Brazil: State of the art. Bot Rev 90: 1-25. DOI: 10.1007/s12229-024-09302-7.
van der Linde S, Holden E, Parkin PI, Alexander IJ, Anderson IC. 2012. Now you see it, now you don't: The challenge of detecting, monitoring and conserving ectomycorrhizal fungi. Fungal Ecol 5: 633-640. DOI: 10.1016/j.funeco.2012.04.002.
Yusran Y, Erniwati E, Rukmi R. 2024. Ethnomycology of wild edible mushrooms by the Bunggu Tribe in West Sulawesi, Indonesia. Intl J Des Nat Ecodyn 19 (6): 2097-2107. DOI: 10.18280/ijdne.190626.