Applying home-based experiments on locally isolated Dictyostelium discoideum to qualitatively demonstrate taxis of social amoebae

##plugins.themes.bootstrap3.article.main##

CELINE YSSABELL CLAUDIO-PARAGAS
https://orcid.org/0009-0001-4478-0665
RAMON CARLO BALAORO-BANZUELA
NIKKI HEHERSON A. DAGAMAC
https://orcid.org/0000-0002-5155-5415
CHRISTIAN ELMARC OCENAR-BAUTISTA
https://orcid.org/0009-0006-7389-0560

Abstract

Abstract. Claudio-Paragas CY, Balaoro-Banzuela RC, Dagamac NHA, Ocenar-Bautista CE. 2023. Applying home-based experiments on locally isolated Dictyostelium discoideum to qualitatively demonstrate taxis of social amoebae. Cell Biol Dev 7: 75-81. Recent years have seen a growing interest in studies on slime molds based in the Philippines, but the inclusivity of Dictyostelids has been largely overlooked. The country has very few studies investigating this category of microbial predators over the past two decades despite their ecological importance in maintaining balance in the soil ecosystem. Thus, we consolidated a multifaceted assessment that examined the behavioral response of locally isolated dictyostelids to an array of external stimuli, particularly under light- and food-induced conditions. The tail-end movement of the motile cells of the clear-cut species, Dictyostelium discoideum Raper, was assessed through a proxy indicator based on the fructification of the species. This was done by setting up two simple home-based experimental setups that investigate the effect of light wavelengths and prey cell viability based on the differentiation rate and one choice experiment that looks into the designation of fructification of D. discoideum, whether it preferentially differentiates under light or in darkness. Our setups revealed the following: (i) fruiting bodies develop in any light wavelength, but fructification is fastest in white ambient light; (ii) dead microbial cells constitute a lag in fruiting body development; and (iii) the decision-making of D. discoideum does not prefer photo avoidance.

2017-01-01

##plugins.themes.bootstrap3.article.details##

References
Amagai A. 1984. Induction by ethylene of macrocyst formation in the cellular slime mould Dictyostelium mucoroides. J Gen Microbiol 130: 2961-2965. DOI: 10.1099/00221287-130-11-2961.
Bandala-Sanchez E, Annesley, SJ, Fisher PR. 2006. A phototaxis signalling complex in Dictyostelium discoideum. Eur J Cell Biol 85 (9-10): 1099-1106. DOI: 10.1016/j.ejcb.2006.04.005.
Brefeld O. 1869. Dictyostelium mucoroides: Ein neuer Organismus aus der Verwandshaft der Myxomyceten. Abhandl Senckenbergish Naturf Ges 7: 85-107.
Brodrick E, Jékely G. 2023. Photobehaviours guided by simple photoreceptor systems. Anim Cogn 2023: 1-19. DOI: 10.1007/s10071-023-01818-6.
Burdine V, Clarke M. 1995. Genetic and physiologic modulation of the prestarvation response in Dictyostelium discoideum. Mol Biol Cell 6 (3): 311-325. DOI: 10.1091/mbc.6.3.311.
Cavender JC, Raper KB. 1965. The Acrasieae in nature. I. Isolation. Am J Bot 52 (3): 294-296. DOI: 10.1002/j.1537-2197.1965.tb06788.x.
Chang MT, Raper KB, Poff KL. 1983. The effect of light on morphogenesis of Dictyostelium mucuroides. Exp Cell Res 143: 335-341. DOI: 10.1016/0014-4827(83)90059-9.
Coleman DC, Wall DH. 2015. Soil fauna: Occurrence, biodiversity, and roles in ecosystem function. In: Paul EA (eds). Soil Microbiology, Ecology and Biochemistry Fourth Edition. Academic Press, London, UK. DOI: 10.1016/B978-0-12-415955-6.00005-0.
Eidi Z, Khorasani N, Sadeghi M. 2021. Reactive/Less-cooperative individuals advance population's synchronization: Modeling of Dictyostelium discoideum concerted signaling during aggregation phase. Plos One 16 (11): e0259742. DOI: 10.1371/journal.pone.0259742.
Fisher P, Dohrmann, Williams K. 1984. Signal processing in Dictyostelium discoideum slugs. In: Satir BH (eds). Modern Cell Biology. A. R. Liss, New York.
Fisher PR. 1997. Genetics of phototaxis in a model eukaryote, Dictyostelium discoideum. Bioessays 19 (5): 397-407. DOI: 10.1002/bies.950190507.
Fisher PR. 2001. Genetic analysis of phototaxis in Dictyostelium. In: Giacomoni PU (eds). Comprehensive Series in Photosciences. Elsevier, Amsterdam. DOI: 10.1016/s1568-461x(13)60001-0.
Francis DJ. 1964. Some studies on phototaxis of Dictyostelium. Cell Compar Physiol 64: 131-138. DOI: 10.1002/jcp.1030640113.
Fukuzawa M. 2018. Reproductive strategies in social amoeba. In: Kobayashi K, Kitano T, Iwao Y, Kondo M (eds). Reproductive and Developmental Strategies. Springer, Tokyo. DOI: 10.1007/978-4-431-56609-0_11.
Guyer HE, Rojas Camacho P, Rollins AW, Rojas Alvarado CA. 2017. Mycetozoan incidence in soils and their potential for ecosystem quality assessment. Curr Res Environ Appl Mycol 7 (4): 322-330. DOI: 10.5943/cream/7/4/9.
Harper RA. 1932. Organization and light relations in Polysphondilium. Bull Torrey Bot Club 59: 49-84. DOI: 10.2307/2480555.
Hong CB, Häder MA, Häder DP, Poff KL. 1981. Phototaxis in Dictyostelium discoideum amoebae. Photochem Photobiol 33 (3): 373-377. DOI: 10.1111/j.1751- 1097.1981.tb05432.x.
Inouye K. 1992. Patterning in the cellular slime moulds. J Biosci 17: 115-127. DOI: 10.1007/BF02703497.
Kawabe Y, Schaap P. 2023. Development of the dictyostelid Polysphondylium violaceum does not require secreted cAMP. Biol Open 12 (2): bio059728. DOI: 10.1242/bio.059728.
Khaire NK. 2003. Functional Studies of Phototaxis in Dictyostelium discoideum Mutants. [Dissertation]. Universität zu Köln, Cologne, Germany.
Kin K, Schaap P. 2021. Evolution of multicellular complexity in the dictyostelid social amoebas. Genes 12 (4): 487. DOI: 10.3390/genes12040487.
Kosugi T, Inouye K. 1989. Negative chemotaxis to ammonia and other weak bases by migrating slugs of the cellular slime moulds. Microbiology 135 (6): 1589-1598. DOI: 10.1099/00221287-135-6-1589.
Li SI, Purugganan MD. 2011. The cooperative amoeba: Dictyostelium as a model for social evolution. Trends Genet 27 (2): 48-54. DOI: 10.1016.j.tig.2010.11.003.
Liu P, Zhang S, Zou Y, Li Z, Stephenson SL, Li Y. 2020. Distribution and ecology of dictyostelids in China. Fungal Biol Rev 34 (4): 170-177. DOI: 10.1016/j.fbr.2020.07.003.
Loomis WF. 2015. Genetic control of morphogenesis in Dictyostelium. Dev Biol 402 (2): 146-161. DOI: 10.1016/j.ydbio.2015.03.016.
Macabago SAB, dela Cruz TEE. 2014. Preservation and extracellular enzyme production of myxomycetes from Lubang Island, Occidental Mindoro, Philippines. Philipp Sci Lett 7 (2): 331-336.
Marée AF, Hogeweg P. 2001. How amoeboids self-organize into a fruiting body: Multicellular coordination in Dictyostelium discoideum. Proc Natl Acad Sci 98 (7): 3879-3883. DOI: 10.1073/pnas.061535198.
Marée AF, Panfilov AV, Hogeweg P. 1999. Phototaxis during the slug stage of Dictyostelium discoideum: A model study. Proc Royal Soc London. Ser B: Biol Sci 266 (1426): 1351-1360. DOI: 10.1098/rspb.1999.0787.
Miura K, Siegert F. 2000. Light affects cAMP signaling and cell movement activity in Dictyostelium discoideum. Proc Natl Acad Sci 97 (5): 2111-2116. DOI: 10.1073/pnas.040554497.
Müller-Taubenberger A, Kortholt A, Eichinger L. 2013. Simple system–substantial share: the use of Dictyostelium in cell biology and molecular medicine. Eur J Cell Biol 92 (2): 45-53. DOI: 10.1016/j.ejcb.2012.10.003
Ostrowski EA, Katoh M, Shaulsky G, Queller DC, Strassmann JE. 2008. Kin discrimination increases with genetic distance in a social amoeba. PLoS Biol 6 (11): e287. DOI: 10.1371/journal.pbio.0060287.
Poff KL, Butler WL. 1974. Spectral characteristics of the photoreceptor pigment of phototaxis in Dictyostelium discoideum. Photochem Photobiol 20 (3): 241-244. DOI: 10.1111/j.1751-1097.1974.tb06573.x.
Poff KL, Loomis Jr WF, Butler WL. 1974. Isolation and purification of the photoreceptor pigment associated with phototaxis in Dictyostelium discoideum. J Biol Chem 249 (7): 2164-2167. DOI: 10.1016/S0021-9258(19)42813-5.
Poff KL, Loomis Jr WF. 1973. Control of phototactic migration in Dictyostelium discoideum. Exp Cell Res 82 (1): 236-240. DOI: 10.1016/0014-4827(73)90266-8.
Rathi A, Clarke M. 1992. Expression of early developmental genes in Dictyostelium discoideum is initiated during exponential growth by an autocrine-dependent mechanism. Mech Dev 36 (3): 173-182. DOI: 10.1016/0925-4773(92)90068-u.
Rea-Maminta MAD, Dagamac NHA, Huyop FZ, Wahab RA, dela Cruz TEE. 2015. Comparative diversity and heavy metal biosorption of myxomycetes from forest patches on ultramafic and volcanic soils. Chem Ecol 31 (8): 741-753. DOI: 10.1080/02757540.2015.1091884.
Schaap P. 2011. Evolutionary crossroads in developmental biology: Dictyostelium discoideum. Development 138 (3): 387-396. DOI: 10.1242/dev.048934.
Wilkins A, Khosla M, Fraser DJ, Spiegelman GB, Fisher PR, Weeks G, Insall RH. 2000. Dictyostelium RasD is required for normal phototaxis, but not differentiation. Genes Dev 14: 1407–1413. DOI: 10.1101/gad.14.11.1407
Yulo PRJ, dela Cruz TEE. 2012a. Diversity and distribution of cellular slime molds (dictyostelids) in Lubang Island, Occidental Mindoro, Philippines. Mycology 3 (3): 188-194. DOI: 10.1080/21501203.2012.708363.
Yulo PRJ, dela Cruz TEE. 2012b. Bacterial and Yeast food preferences of cellular slime molds (dictyostelids) isolated from Lubang Island, Occidental Mindoro, Philippines. Philipp J Syst Biol 6: 46-53.