Potential of indigenous bacteria from West Sumatra (Indonesia) as plant growth-promoting rhizobacteria and biological soil conditioners in vitro

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YULENSRI
BENNY WARMAN
NOVERI
FRI MAULINA

Abstract

Abstract. Yulensri, Warman B, Noveri, Maulina F. 2025. Potential of indigenous bacteria from West Sumatra (Indonesia) as plant growth-promoting rhizobacteria and biological soil conditioners in vitro. Biodiversitas 26: 3378-3386. Farmers depend on chemical fertilizers to increase rice production in the lowlands. As a result, rice fields have become critical due to physical, chemical, and biological degradation caused by the continuous use of chemical fertilizers and environmental pollution from residues. The use of potential indigenous bacteria could solve the problem. Therefore, this study aimed to isolate the indigenous bacteria from the banana stump in West Sumatra and the rhizosphere of the maize plant. The isolated bacteria were identified for their potential as plant growth-promoting rhizobacteria and biological soil conditioners. The experiment was conducted from March to May 2024 at the Plant Protection Laboratory of Politeknik Pertanian Negeri Payakumbuh and the Biotechnology Laboratory of the Institut Pertanian Bogor, Indonesia. The variables observed were the potential of bacteria as N fixers, P solubilizing, secretion of protease, kinase, cellulase enzymes, and exopolysaccharide (EPS). The results of the molecular analysis showed that potential isolates were Azotobacter beijerinckii Lipman, 1904 and Alcaligenes faecalis C. Both bacteria showed potential as PGPR and biological soil conditioners, which positively fixed nitrogen, can solubilize phosphate, produce auxins, and secrete chitinase, cellulase, protease enzymes, and EPS.

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Atekan, Nuraini Y, Handayanto E, Syekhfani. 2014. The potential of phosphate solubilizing bacteria isolated from sugarcane wastes for solubilizing phosphate. J. JDMLM 1(4): 175-182. DOI:10.15243/jdmlm.2014.014.175.

Adelita DN, Yuriadi.2019. Isolasi dan karakterisasi bakteri Alcaligenes sp. dari feses kuda di daerah istimewa Yogyakarta. Jurnal online

http://etd.repository.ugm. Universitas Gajah Mada. 2020. Indonesia hadapi 14 Ha lahan Kritis. id/penelitian/detail/175459

Nugroho, A. 2020. Indonesia hadapi 14 Ha lahan Kritis. Universitas Gajah Mada. Yogyakarta.

Cappuccino dan Sherman, 2014/ Mycro Biology and laboratory Manual 10th edition. Internet.https://www.pearson.com/us/highereducation/product/Cappuccino-Microbiology-A-Laboratory-Manual-10th-Edition/9 .

Cornelia at al.2024. Karakterisasi morfologi dan fisiologi mikrob pelarut fosfat dan mikroba penambat n2 (azotobacter) dari rhizosfer tanaman Padi dan

tanah hutan cifor Dramaga Bogor. Bio-Lectura: Jurnal Pendidikan Biologi, 1 : 113-121. DOI : https://doi.org/10.31849/bl.v11i1.19518

Cilas C, Goebel FR, Babin R and Avelino J. 2016. Tropical Crop Pests and Diseases in a Climate Change Setting—A Few Examples . Chapter 6.

DOI: 10.1007/978-94-017-7462-8_6

Divya CG, Indah.G2020. Isolation And Characterization Of Exopolysaccharide Producing Lactic Acid Bacteria From Kersen Fruit (Muntingia calabura

L.). J. Sains Dasar 2020 9 (2) 42 – 49.. file:///C:/Users/USER/Downloads/34523-104900-1-PB.pdf

Faccini G, Garzon S, Martinez M, Varela A. 2004. eval_uation of the effects of a dual inoculum of phosphate-solubilizing bacteria and Azotobacter

chroochoccum in creolo potato (Papa”Criola”) . http://www.ag.auburn edu/argentina/pdf manuscripts/estrada.pdf (28 Oktober 2014).

Foysal Md J. and Lisa AK. 2018. Isolation and characterization of Bacillus sp. strain BC01 from soil displaying potent antagonistic activity against plant

and fish pathogenic fungi and bacteria. J Genet Eng Biotechnol. 16(2):387-392. doi: 10.1016/j.jgeb.2018.01.005

Fakhrial E, Krisdianilo V, Harmileni, Lister IE, Nugroho TT, Saryono. 2021. Isolation, characterization, activity test and molecular identification of

thermophilic bacteria producing proteases from Dolok Tinggi Raja Natural Hot Springs, North Sumatra, Indonesia. J. Biodiversitas 22 (4) 1725-1732

DOI: 10.13057/biodiv/d220416

Hasan A, Tabassum B, Hashim M and Khan N. 2024. A Review. Bacteria 2024, 3, 59–75. MDPI. https://doi.org/10.3390/bacteria3020005

Hindersah R. dan Simarmata T. 2004. Artikel Ulas Balik. Potensi Rizobakteri Azotobacter dalam Meningkatkan Kesehatan Tanah. Jurnal Natur

Indonesia. Vol.5(2). P : 127-133. file:///D:/PO/979-1935-1-SM.pdf

Hanifah T, Ratna S, Suranto (2016). Selection and identification of xylanase producing alkaliphilic bacteria isolated from soil in Krakitan hill,Bayat,

Klaten. Bioteknologi 4 (1): 6-12

Hamim NR, Mubarik I. Hanarida, Sumarni. 2008. Pengaruh pupuk hayati terhadap pola serapan hara, ketahanan penyakit, produksi dan kualitas hasil

beberapa komoditas tanaman pangan dan sayuran unggulan KKP3T. Institut Pertanian Bogor. Bogor.

Harahap, Nasrul S, Dwi, A N, Gofar. 2020. Eksplorasi dan Karakterisasi Bakteri Penghasil Eksopolisakarida dari Tanah di Kalimantan Barat untuk

Peningkatan Agregasi Tanah Berpasir. http://repository.ipb.ac.id/handle/123456789/93818.

I¢imura, M. 1980. A simple method for estimating evolutionary mte of base substitutions through comparative studies of nucleotide sequencei Journal of Molecular

Evolution 16:111-JZ0

Janatiningrum1 I, Lestari Y. 2022. Enzyme production, antibacterial and antifungal activities of actinobacteria isolated from Ficus deltoidea rhizosphere.

J. B iod i v e r s i t a s Vol. 23 (4,): 1950-1957. DOI: 10.13057/biodiv/d230429

Ladha JK, Peoples MB, Reddy PM, Jatish C. Biswas , Bennett , Mangi LJ, Timothy J, Krupnik .2022. Biological nitrogen fixation and prospects for

ecological intensification in cereal-based cropping systems. Field Crops Research. Vol. 283 (1): https://doi.org/10.1016/j.fcr.2022.10854

Lugtenberg, and Kamilova .(2009). Plant growth promoting rhizobacteria. Jenis mikroba yang sudah teridentifikasi pada MOL bonggol pisang.

http://www.gerbangpertanian.com/p/profil.html. tanggal download . 18 Oktober 2018.

Masri1 M, Sukmawaty E , Aditia L. 2021. Novel chitinolytic bacteria from the shrimp shell processing waste. J. Biodiversitas Vol. 22 (5): 2672-2681. DOI: 10.13057/biodiv/d220527

Meidong R, Doolgindachbaporn S, Jamjan W, Sakai K, Tashiro W, Okugawa Y, Tongpim S, A novel probiotic 2017. Bacillus siamensis B44v isolated from

Thai pickled vegetables (Phak-dong) for potential use as a feed supplement in aquaculture. J. Gen. Apple. Microbiol., 63, 246–253. Doi :10.2323/jgam.2016.12.002

Noor M. Al-ameri A, alyousifÿ NA. 2024. Isolation, screening, and molecular characterization using 16S rDNA gene of feather-degrading bacteria isolated

from poultry soil in Basrah Province, Iraq. Biodiversitas 25 (9) 3217-3226. DOI: 10.13057/biodiv/d250944.

Novia1 D, Sandra A, Yogi, Allismawita, and Putra AA. Potential of Indigenous Microorganisms (IMO) from cow manure, elephant grass, Aloe vera,

pineapple skin to the N, P and K content of organic cow manure. 2021. IOP Conf. Series: Earth and Environmental Science 888 (2021) 012038 IOP

Publishing doi:10.1088/1755-1315/888/1/012038.

Ni’matuzahroh, Silvia KS, Irine PN, Aprilla DP, Lisa M,Marjayandari, Nastiti T, Syahriar NMMI. 2019. The potential of indigenous bacteria from oil sludge

for biosurfactant production using hydrolysate of agricultural waste. Bio diversitas. (20), 5 : 1374-137. DOI: 10.13057/biodiv/d200529

Prihatiningsih N, Asnani A, Djatmiko HA, 2021. Extracellular protease from Bacillus subtilis B315 with antagonistic activity against bacterial wilt pathogen

(Ralstonia solanacearum) of chili. Biodiversitas 22 (3) 1291-1295. DOI: 10.13057/biodiv/d220327

Ratna et al. 2015. Eksplorasi Bakteri Pemfiksasi Nitrogen Non Simbiotik Penghasil IAA dan Pelarut Fosfat Asal Rhizosfer Tanaman Apel Kota Batu, Jawa

Timur . file:///C:/Users/USER/Downloads/jpbiologidd150638.pdf . Jurnal Biotropika | Vol. 3 (2) 55-59.|

Reddy PN, Mounika C, Reddy M.S, Raigar BL, Chandravanshi, M and Kashyap S,2024. The impact of soil biological degradation: A review. J.NAAS. Vol.7

(9): 158 – 165. https://doi.org/10.33545/2618060X.2024.v7.i9Sc.1445

Sembiring T and Sabrina T. 2022. Diversity of phosphate solubilizing bacteria and fungi from andisol soil affected by the eruption of Mount Sinabung, North

Sumatra, Indonesia. J. Biodiversitas 23 (2) 714-720. DOI: 10.13057/biodiv/d230216

Sodhi KS, Chandra KS . Mohit K. 2023. Whole-genome sequencing of Alcaligenes sp. strain MMA: insight into the antibiotic and heavy metal resistant

genes. Pharmacol. (14) https://doi.org/10.3389/fphar.2023.1144561

Suryatmana P, Sandrawati A, Putra IN, Kamaluddin NN. 2020. Potensi Bakteri Pereduksi Sulfat dan Jenis Bahan Organik dalam Pengolahan Air Asam

Tambang menggunakan Sistem Constructed Wetland Tanaman akar Wangi (Vetiveria zizanioides L). Beranda > Vol 18, No 2 (2020) >

Tamura E. Stecher G and Kumar S. 2021. MEGA 1J. Molecular Evolutionary Genetics Analysis Version 11. Molecular Biology and Evolution .

httpr//doi org/10.1093/moIbev/msab120

Tobing, Mubarik, Tridiati, 2014. Aplikasi Bradyrhizobium japonicum dan Aeromonas salmonicida pada penanaman kedelai di tanah asam dalam percobaan

rumah kaca. Jurnal. Biotik, ISSN: 2337-9812, Vol. 2, No. 1, Ed. April 2014, Hal. 1-7. file:///C:/Users/USER/Downloads/229-415-1-SM.pdf

Utomo BS, Nuraini Y dan Widianto. 2015. Kajian kemantapan agregat tanah pada pemberian beberapa jenis bahan di perkebunan kopi robusta. J. Tanah dan

Sumberdaya organik Lahan 2(1): 111-117.

Wang W, Ju Y, Liu N, Shi S & Hao L. 2023. Structural characteristics of microbial exopolysaccharides in association with their biological activities: a review

Chem. Biol. Technol. Agric. vol. 10, (137):9-16.. https://doi.org/10.1186/s40538-023-00515-3

Whitfield1,GB, Marmont LS and Howell PL. 2015. Enzymatic modifications of exopolysaccharides enhance bacterial persistence. J. Fromtiers Microbiol.

Vol.6 (471). https://doi.org/10.3389/fmicb.2015.00471

Yulensri, Noveri, Arneti. 2021. Consortium Formulation of Bacteria as a Fertilizer and Biological Pesticide in Various. IOP Conf. Series: Earth and

Environmental Science709 (2021) 012081. doi:10.1088/1755-1315/709/1/012081

Zuleika E, Solikhah , Utomo NAP, Endah N, Assalafalapsakul. 2022. Bakteri pendegradasi selulosa asal Palangkaraya. Kalimantan Tengah, Indonesia

sebagai pengurai serat gambut untuk mempercepat pemadatan tanah gambut. J. Biodiversitas 3 (23) 1648-1654. DOI: 10.13057/biodiv/d230356

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