Genetic polymorphism of Populus pruinosa and Populus euphratica in Kazakhstan based on ISSR markers

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DINARA AKHATAYEVA
MAKSIM KUTSEV
POLINA VESSELOVA
ZARINA INELOVA
BEKTEMIR OSMONALI
MENGTAY AITZHAN
YELENA ZAPARINA
LAURA SHADMANOVA
EMIL BOROS

Abstract

Abstract. Akhatayeva D, Kutsev M, Vesselova P, Inelova Z, Osmonali B, Aitzhan M, Zaparina Y, Shadmanova L, Boros E. 2025. Genetic polymorphism of Populus pruinosa and Populus euphratica in Kazakhstan based on ISSR markers. Biodiversitas 26: 6120-6129. The genus Populus (Salicaceae) in Kazakhstan is represented by 13 species, although the exact number of species, including varieties and hybrids, has not been clearly established. Among them, Populus pruinosa and Populus euphratica are native species with rapidly declining population sizes and shrinking habitats. Comprehensive studies on their biology and genetic diversity in Kazakhstan have not reported so far. This study aimed to assess genetic diversity, compare patterns of differentiation, evaluate the relationship between genetic variation and ecological conditions in natural populations of both species. Genetic variability was assessed using the ISSR method, and statistical analysis was performed using ANOVA. Samples from six natural populations in southern Kazakhstan (three populations of P. pruinosa and three of P. euphratica) showed distinct interspecific differentiation and variable genetic diversity. P. pruinosa populations had higher allelic diversity (h = 0.114-0.153) and expected heterozygosity (0.107-0.139) than P. euphratica (h = 0.041-0.085). Greater genetic diversity in P. pruinosa indicates stronger adaptive potential to arid environments. A moderate correlation was found between genetic and geographic distances (r = 0.597). The findings highlight P. pruinosa superior ecological adaptability. Both species are recommended for targeted conservation and restoration of arid ecosystems in Kazakhstan.

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Ahmed MF, Hosni AM, Hewidy M, Abd El Razik AB, Bahnasy MI. 2019. Morphological, chemical characters and genetic analysis discrimination of five naturalized Populus species inhabiting four governorate territories of Egypt. Arab Univ J Agric Sci 27 (4): 2273-2290. DOI: 10.21608/ajs.2019.17898.1099.

Aishan T, Halik Ü, Betz F, Tiyip T, Ding J, Nuermaimaiti Y. 2015. Stand structure and height diameter relationship of a degraded Populus euphratica forest in the lower reaches of the Tarim River, Northwest China. J Arid Land 7: 544-554. DOI: 10.1007/s40333-015-0046-8.

Baitulin IO, Sitpayeva GT. 2014. Red Book of Kazakhstan. Public-Welfare, Astana, Kazakhstan. [Russian]

Broeck AV, Villar M, van Bockstaele E, Vanslycken J. 2005. Natural hybridization between cultivated poplars and their wild relatives: Evidence and consequences for native poplar populations. Ann For Sci 62 (7): 601-613. DOI: 10.1051/forest:2005072.

Bruat M, Heng S, Colas C, Sena-Velez M, Chefdor F, Héricourt F, Depierreux C, Morabito D, Malik S, Destandau E, Carpin S, Lamblin F. 2025. Growth parameter optimization of hybrid poplar (Populus tremula × Populus alba) hairy root culture for the production of antioxidant specialized metabolites. Plant Cell Tiss Organ Cult 161: 31. DOI: 10.1007/s11240-025-03064-9.

Chen K, Jia X, Ren P, Liu J. 2011. Genetic relationships of poplar species in section Tacamahaca based on cpDNA and ISSR. Sci Res Essays 6 (19): 4048-4054. DOI: 10.5897/sre11.289.

Datta J, Lal N. 2011. Genetic differentiation in Cicer arietinum L. and Cajanus cajan L. Millspaugh using SSR and ISSR marker systems. Adv Biotechnol 11 (05): 39-44.

Du W, Wang Y, Xie D, Li E, Bai Y, Shang C, Zhang Z. 2024. Phylogenomics reveal Populus gonggaensis as a hybrid between P. lasiocarpa and P. cathayana (Salicaceae). PhytoKeys 237: 161-177. DOI: 10.3897/phytokeys.237.103012.

Earl DA, vonHoldt BM. 2012. STRUCTURE HARVESTER: A website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4: 359-361. DOI: 10.1007/s12686-011-9548-7.

Feng J, Jiang D, Shang H, Dong M, Wang G, He X, Zhao C, Mao K. 2013. Barcoding poplars (Populus L.) from Western China. PLoS One 8 (8): e71710. DOI: 10.1371/journal.pone.0071710.

Guleria I, Kumari A, Lacaille-Dubois M-A, Nishant, Kumar V, Saini AK, Dhatwalia J, Lal S. 2022. A review on the genus Populus: A potential source of biologically active compounds. Phytochem Rev 21: 987-1046. DOI: 10.1007/s11101-021-09772-2.

Hao J, Yue N, Zheng C. 2017. Analysis of changes in anatomical characteristics and physiologic features of heteromorphic leaves in a desert tree, Populus euphratica. Acta Physiol Plant 39: 160. DOI: 10.1007/s11738-017-2467-9.

Hussein TS, Tawfik AA, Khalifa MA. 2008. Molecular identification and genetic relationships of six strawberry varieties using ISSR markers. Intl J Agric Biol 10: 677-680.

Jianming G, Shougong Z, Liwang Q, Yong Z, Chunguo W, Wenqin S. 2006. ISSR and AFLP identification and genetic relationships of Chinese elite accessions from the genus Populus. Ann For Sci 63 (5): 499-506. DOI: 10.1051/forest:2006031.

Kairova MG, Vesselova PV, Kudabayeva GM, Sitpayeva GT. 2023. Poplar species in Kazakhstan and some genotyping problems. Acad J Phys Chem Sci 345 (1): 24-32. DOI: 10.32014/2023.2518-1483.181.

Law of the Republic of Kazakhstan on the Plant World. 2023. https://adilet.zan.kz/rus/docs/Z2300000004.

Law on Amendments and Additions to Certain Legislative Acts on the Plant World and Specially Protected Natural Areas. 2023. https://adilet.zan.kz/rus/docs/Z2300000005.

Levi A, Thomas CE, Newman M, Reddy OUK, Zhang X, Xu Y. 2004. ISSR and AFLP markers differ among American watermelon cultivars with limited genetic diversity. J Am Soc Hortic Sci 129 (4): 553-558. DOI: 10.21273/jashs.129.4.0553.

Ling H, Xu H, Guo B, Deng X, Zhang P, Wang X. 2019. Regulating water disturbance for mitigating drought stress to conserve and restore a desert riparian forest ecosystem. J Hydrol 572: 659-670. DOI: 10.1016/j.jhydrol.2019.03.049.

Liu Y, Su M, Zhao X, Liu M, Wu J, Wu X, Lu Z, Han Z. 2025. Combined transcriptomic and metabolomic analysis revealed the salt tolerance mechanism of Populus talassica × Populus euphratica. BMC Plant Biol 25: 361. DOI: 10.1186/s12870-025-06288-1.

Ma T, Wang J, Zhou G, Yue Z, Hu Q, Chen Y, Liu J. 2018. Genomic insights into salt adaptation in Populus euphratica and P. pruinosa. Nat Comm 9: 4495. DOI: 10.1038/s41467-018-06944-6.

Metsalu T, Vilo J. 2015. ClustVis: A web tool for visualizing clustering of multivariate data using principal component analysis and heatmap. Nucleic Acids Res 43 (W1): W566-W570. DOI: 10.1093/nar/gkv468.

Muellner-Riehl AN. 2019. Mountains as evolutionary arenas: Patterns, emerging approaches, paradigm shifts, and their implications for plant phylogeographic research in the Tibeto-Himalayan region. Front Plant Sci 10: 195. DOI: 10.3389/fpls.2019.00195.

Mutegi SM, Muchugi A, Carsan S, Kariba R, Jamnadass R, Oballa P, Brunner AM, Runo S. 2016. Genetic diversity of the African poplar (Populus ilicifolia) populations in Kenya. Tree Genet Genomes 12: 66. DOI: 10.1007/s11295-016-1013-z.

Nasimovich YA, Kostina MV, Vasilieva NV. 2019. Species concept in poplars (Populus L., Salicaceae) based on representatives of subgenus Tacamahaca (Spach) Penjkovsky from Russia and neighboring countries. Socio-Ecol Technol 9 (4): 426-466. DOI: 10.31862/2500-2961-2019-9-4-426-466. [Russian]

Osmonali BB, Vesselova PV, Kudabayeva GM, Skaptsov MV, Shmakov AI, Friesen N. 2023. Phylogeny and flow cytometry of the genus Kalidium Moq. (Amaranthaceae s.l.) in Kazakhstan. Plants 12 (14): 2619. DOI: 10.3390/plants12142619.

POWO [Plants of the World Online]. 2025. Plants of the World Online. Facilitated by the Royal Botanic Gardens, Kew. http://www.plantsoftheworldonline.org/

Rakhimzhanov AN, Ivashchenko AA, Kirillov VY, Aleka VP, Stikhareva TN. 2021. Assessment of the current status of the Turanga forests in southeast Kazakhstan. Eur J Ecol 67 (2): 86-96. DOI: 10.26577/eje.2021.v67.i2.09.

Ratnaparkhe MB, Tekeoglu M, Muehlbauer FJ. 1998. Inter-Simple-Sequence-Repeat (ISSR) polymorphisms are useful for finding markers associated with disease resistance gene clusters. Theor Appl Genet 97: 515-519. DOI: 10.1007/s001220050925.

Red Data Book of Kazakhstan. 2014. Red Data Book of Kazakhstan Volume 2. Institute of Botany and Phytointroduction, Astana.

Red Data Book. 2007. Wild-Growing Rare and Endangered Plant Species. State Cadastre of Plants of Zhambyl Region, Almaty.

Rousset F. 2000. Genetic differentiation between individuals. J Evol Biol 13 (1): 58-62. DOI: 10.1046/j.1420-9101.2000.00137.x.

Stikhareva T, Ivashchenko A, Kirillov V, Rakhimzhanov A. 2021. Floristic diversity of threatened woodlands of Kazakhstan formed by Populus pruinosa Schrenk. Turk J Agric For 45 (2): 165-178. DOI: 10.3906/tar-2006-70.

Sun J, Xu J, Qiu C, Zhai J, Zhang S, Zhang X, Wu Z, Li Z. 2024. The chromosome-scale genome and population genomics reveal the adaptative evolution of Populus pruinosa to desertification environment. Hortic Res 11 (3): uhae034. DOI: 10.1093/hr/uhae034.

Sun S, Wang J, Cai C. 2025. Spectral estimation of carotenoid density in Populus pruinosa leaves. Forests 16: 394. DOI: 10.3390/f16030394.

Thomas FM, Jeschke M, Zhang X, Lang P. 2017a. Stand structure and productivity of Populus euphratica along a gradient of groundwater distances at the Tarim River (NW China). J Plant Ecol 10 (5): 753-764. DOI: 10.1093/jpe/rtw078.

Thomas FM, Yu R, Schäfer P, Zhang X, Lang P. 2017b. How diverse are Populus “diversifolia” leaves? Linking leaf morphology to ecophysiological and stand variables along water supply and salinity gradients. Flora 233: 68-78. DOI: 10.1016/j.flora.2017.05.007.

Vanden Broeck A, Villar M, Van Bockstaele E, Vanslycken J. 2005. Natural hybridization between cultivated poplars and their wild relatives: evidence and consequences for native poplar populations. Ann For Sci 62 (7): 601-613. DOI: 10.1051/forest:2005072.

Vdovina TA, Isakova EA, Lagus OA, Sumbembayev AA. 2024. Selection assessment of promising forms of natural Hippophae rhamnoides (Elaeagnaceae) populations and their offspring in the Kazakhstan Altai Mountains. Biodiversitas 25 (4): 1809-1822. DOI: 10.13057/biodiv/d250451.

Vesselova P, Makhmudova K, Kudabayeva G, Osmonali B, Mikhalev V. 2022. Current growth conditions of Populus diversifolia Schrenk and Populus pruinosa Schrenk in the Syr-Darya Valley. Online J Biol Sci 22 (4): 425-438. DOI: 10.3844/ojbsci.2022.425.438.

Vesselova PV, Kudabayeva GM. 2017. Meadow vegetation of the Syrdarya river valley (Kyzylorda area, Kazakhstan). In: Guarino R, Bazan G, Barbera G (eds). The 60th Annual Symposium of the International Association for Vegetation Science (IAVS). Vegetation Patterns in Natural and Cultural Landscapes, Palermo University Press, Palermo.

Wang J, Wu Y, Ren G, Guo Q, Liu J, Lascoux M. 2011. Genetic differentiation and delimitation between ecologically diverged Populus euphratica and P. pruinosa. PLoS One 6 (10): e26530. DOI: 10.1371/journal.pone.0026530.

Wu Z, Jiang Z, Li Z, Jiao P, Zhai J, Liu S, Han X, Zhang S, Sun J, Gai Z, Qiu C, Xu J, Liu H, Qin R, Lu R. 2023. Multi-omics analysis reveals spatiotemporal regulation and function of heteromorphic leaves in Populus. Plant Physiol 192: 188-204. DOI: 10.1093/plphys/kiad063.

Yu L, Dong H, Li Z, Han Z-J, Korpelainen H, Li C. 2020. Species-specific responses to drought, salinity and their interactions in Populus euphratica and P. pruinosa seedlings. J Plant Ecol 13 (5): 563-573. DOI: 10.1093/jpe/rtaa043.

Yusup A, Halik Ü, Abliz A, Aishan T, Keyimu M, Wei J. 2022. Population structure and spatial distribution pattern of Populus euphratica Riparian Forest under environmental heterogeneity along the Tarim River, Northwest China. Front Plant Sci 13: 844819. DOI: 10.3389/fpls.2022.844819.

Zhai JT, Li YL, Han ZJ, Li ZJ. 2020. Morphological, structural and physiological differences in heteromorphic leaves of Euphrates poplar during development stages and at crown scales. Plant Biol 22 (3): 366-375. DOI: 10.1111/plb.13078.

Zheng Y, Jiao P, Zhao Z, Li Z. 2016. Clonal growth of Populus pruinosa Schrenk and its role in the regeneration of riparian forests. Ecol Eng 94: 380-392. DOI: 10.1016/j.ecoleng.2016.05.080.

Zhou Z, Yan J, Zhang X, Ye Z, Xu F, Yuan J. 2018. Genetic diversity and population structure of 29 species of genus Populus assessed by AFLP markers. Biotechnology 17: 86-94. DOI: 10.3923/biotech.2018.86.94.

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