Screening for extracellular synthesis of silver nanoparticles by bacteria isolated from Al-Halfaya oil field reservoirs in Missan province, Iraq

##plugins.themes.bootstrap3.article.main##

HASAN GHALI ABDULHASAN ALSHAMI
WIJDAN H. AL-TAMIMI
RASHID RAHIM HATEET

Abstract

Abstract. Alshami HGA, Al-Tamimi WH, Hateet RR. 2022. Screening for extracellular synthesis of silver nanoparticles by bacteria isolated from Al-Halfaya oil field reservoirs in Missan province, Iraq. Biodiversitas 23: 3462-3470. Microorganisms that live in deep environments are thought to be adapted to the conditions of these environments and possess enzymatic systems that can be useful in scientific and commercial applications. The study aimed to isolate, identify, and screening of silver nanoparticles (AgNPs)-producing bacteria from five samples of produced water of the Al-Halfaya oil field reservoirs in Missan governorate, Iraq. The results revealed a total of 22 bacterial isolates were isolated and identified by morphological features and amplification of the 16S rDNA gene. The isolates are belonging to nine species, including Bacillus cereus strain DBA1.1, Bacillus thuringiensis strain MSP51, Neobacillus drentensis strain ROA042, Enterococcus faecalis strain 2674, Exiguobacterium mexicanum strain AB201, Klebsiella quasipneumoniae strain KP18-31, Klebsiella quasipneumoniae subsp. similipneumoniae strain 2437, Klebsiella pneumoniae strain IOB-L, and Acinetobacter lwoffii strain K34. The Gram-positive bacteria were the most dominant (55.56%), and the most frequent isolate was Klebsiella quasipneumoniae strain KP18-31 (63.64%). Six species out of nine species were recognized as AgNPs producing bacteria and B. cereus strain DBA1 was the best and most potent isolate in the synthesis of AgNPs. The phylogenetic tree was constructed depending on 16S rDNA gene sequences to determine the evolutionary relationship among the isolated bacteria.

##plugins.themes.bootstrap3.article.details##

References
Ahmed, T., Shahid, M., Noman, M., Niazi, M. B. K., Mahmood, F., Manzoor, I., Zhang, Y., Li, B., Yang, Y., Yan, C., & Chen, J. (2020). Silver nanoparticles synthesized by using Bacillus cereus SZT1 ameliorated the damage of bacterial leaf blight pathogen in rice. Pathogens,9(3),1–17. https://doi.org/10.3390/pathogens9030160
Al-Tamimi, W. H., Lazim, S. A., Abd Al-Sahib, M. A., Hameed, Z. M., Al-Amara, S. S. M., Burghal, A. A., & Al-Maqtoofi, M. Y. (2019). Improved oil recovery by using biosurfactants produced from bacilli bacteria isolated from oil reservoirs in iraq. Pollution Research, 38(3), 551–556.
Alahmad, A., Feldhoff, A., Bigall, N. C., Rusch, P., Scheper, T., & Walter, J. G. (2021). Hypericum perforatum L.-mediated green synthesis of silver nanoparticles exhibiting antioxidant and anticancer activities. Nanomaterials, 11(2),1–26. https://doi.org/10.3390/nano11020487
Alyousif, N. A., Al-tamimi, W. H., & Al-luaibi, Y. Y. Y. (2020). Screening , enhance production and characterization of biosurfactant produced by Pseudomonas aeruginosa isolated from hydrocarbon contaminated soil. EurAsian Journal of BioSciences, 14(July 2019), 4377–4391.
Bharti, S., Mukherji, S., & Mukherji, S. (2020). Extracellular synthesis of silver nanoparticles by Thiosphaera pantotropha and evaluation of their antibacterial and cytotoxic effects. 3 Biotech,10(6),1–12. https://doi.org/10.1007/s13205-020-02218-0
Bhusal, A., & Muriana, P. M. (2021). Isolation and Characterization of Nitrate Reducing Bacteria for Conversion of Vegetable-Derived Nitrate to ‘Natural Nitrite.’Applied Microbiology, 1(1),11–23. https://doi.org/10.3390/applmicrobiol1010002
Cai, M., Nie, Y., Chi, C. Q., Tang, Y. Q., Li, Y., Wang, X. B., Liu, Z. S., Yang, Y., Zhou, J., & Wu, X. L. (2015). Crude oil as a microbial seed bank with unexpected functional potentials. ScientificReports,5,1–12. https://doi.org/10.1038/srep16057
Dash, C., & J Payyappilli, R. (2016). KOH string and Vancomycin susceptibility test as an alternative method to Gram staining. Journal of International Medicine and Dentistry, 3(2), 88–90. https://doi.org/10.18320/jimd/201603.0288
Dawadi, S., Katuwal, S., Gupta, A., Lamichhane, U., Thapa, R., Jaisi, S., Lamichhane, G., & Bhattarai, D. P. (2021). Review Article Current Research on Silver Nanoparticles?: Synthesis , Characterization , and Applications. Journal of Nanomaterials, 2021, 1–23.
Elumalai, P., Parthipan, P., Narenkumar, J., Anandakumar, B., Madhavan, J., Oh, B. T., & Rajasekar, A. (2019). Role of thermophilic bacteria (Bacillus and Geobacillus) on crude oil degradation and biocorrosion in oil reservoir environment.3Biotech,9(3),0. https://doi.org/10.1007/s13205-019-1604-0
Errington, J., & van der Aa, L. T. (2020). Microbe profile: Bacillus subtilis: Model organism for cellular development, and industrial workhorse. Microbiology (United Kingdom), 166(5),425–427. https://doi.org/10.1099/mic.0.000922
Frank, Y., Banks, D., Avakian, M., Antsiferov, D., Kadychagov, P., & Karnachuk, O. (2016). Firmicutes is an Important Component of Microbial Communities in Water-Injected and Pristine Oil Reservoirs, Western Siberia, Russia. Geomicrobiology Journal, 33(5),387–400. https://doi.org/10.1080/01490451.2015.1045635
Gahlawat, G., & Choudhury, A. R. (2019). A review on the biosynthesis of metal and metal salt nanoparticles by microbes. RSC Advances, 9(23), 12944–12967. https://doi.org/10.1039/c8ra10483b
Ghosh, S., Ahmad, R., Banerjee, K., AlAjmi, M. F., & Rahman, S. (2021). Mechanistic Aspects of Microbe-Mediated Nanoparticle Synthesis. Frontiers in Microbiology,12(May),112. https://doi.org/10.3389/fmicb.2021.638068
Gloria Martin, K. D., & Vergara Padilla, K. G. (2020). Sunlight Mediated Synthesis of Silver Nanoparticles by Bacillus sp and Its Antibacterial Property. Oriental Journal of Chemistry, 36(03), 419–424. https://doi.org/10.13005/ojc/360309
Gopal, N., Hill, C., Ross, P. R., Beresford, T. P., Fenelon, M. A., & Cotter, P. D. (2015). The prevalence and control of Bacillus and related spore-forming bacteria in the dairy industry. Frontiers in Microbiology, 6(DEC), 1–18. https://doi.org/10.3389/fmicb.2015.0148
Hamzah, A., Abd-Alsahib, W., & Mahdi, S. (2020). Isolation and identification new bacterial strains isolated from different sources of Al-Rafidiyah oil field in Iraq. Catrina: The International Journal of Environmental Sciences, 21(1), 15–22. https://doi.org/10.21608/cat.2020.23299.1041
Jahan, I., Erci, F., & Isildak, I. (2021). Rapid green synthesis of non-cytotoxic silver nanoparticles using aqueous extracts of “Golden Delicious” apple pulp and cumin seeds with antibacterial and antioxidant activity. SN Applied Sciences,3(1),1–14. https://doi.org/10.1007/s42452-020 04046-6
Khodashenas, B. (2019). Nitrate reductase enzyme in Escherichia coli and its relationship with the synthesis of silver nano particles. Journal of Research in Science, Engineering and Technology, 3(01),26–32. https://doi.org/10.24200/jrset.vol3iss01pp26-32
Lee, P. Y., Costumbrado, J., Hsu, C. Y., & Kim, Y. H. (2012). Agarose gel electrophoresis for the separation of DNA fragments. Journal of Visualized Experiments,62,1–5. https://doi.org/10.3791/3923
Li, X. X., Mbadinga, S. M., Liu, J. F., Zhou, L., Yang, S. Z., Gu, J. D., & Mu, B. Z. (2017). Microbiota and their affiliation with physiochemical characteristics of different subsurface petroleum reservoirs. International Biodeterioration and Biodegradation, 120,170–185. https://doi.org/10.1016/j.ibiod.2017.02.005
Nazina, T. N., Tourova, T. P., Poltaraus, A. B., Novikova, E. V., Grigoryan, A. A., Ivanova, A. E., Lysenko, A. M., Petrunyaka, V. V., Osipov, G. A., Belyaev, S. S., & Ivanov, M. V. (2001). Taxonomic study of aerobic thermophilic bacilli: Descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus th. International Journal of Systematic and Evolutionary Microbiology, 51(2), 433–446. https://doi.org/10.1099/00207713-51-2-433
Orphan, V. J., Goffredi, S. K., Delong, E. F., & Boles, J. R. (2003). Geochemical influence on diversity and microbial processes in high temperature oil reservoirs. Geomicrobiology Journal, 20(4),295–311. https://doi.org/10.1080/01490450303898
Ozyurek, S. B., & Bilkay, I. S. (2017). Determination of petroleum biodegradation by bacteria isolated from drilling fluid, waste mud pit and crude oil. Turkish Journal of Biochemistry, 42(6),609–616. https://doi.org/10.1515/tjb-2017-0087
Pannekens, M., Kroll, L., Müller, H., Mbow, F. T., & Meckenstock, R. U. (2019). Oil reservoirs, an exceptional habitat for microorganisms. New Biotechnology, 49(November2018),1–9. https://doi.org/10.1016/j.nbt.2018.11.06
Patel, S., & Gupta, R. S. (2020). A phylogenomic and comparative genomic framework for resolving the polyphyly of the genus bacillus: Proposal for six new genera of bacillus species, peribacillus gen. nov., cytobacillus gen. nov., mesobacillus gen. nov., neobacillus gen. nov., metabacillu. International Journal of Systematic and Evolutionary Microbiology,70(1),406–438. https://doi.org/10.1099/ijsem.0.003775
Peiris, M. K., Gunasekara, C. P., Jayaweera, P. M., Arachchi, N. D. H., & Fernando, N. (2017). Biosynthesized silver nanoparticles: Are they effective antimicrobials? Memorias Do Instituto OswaldoCruz,112(8),537–543. https://doi.org/10.1590/007402760170023
Prakash, A., Bisht, S., Singh, J., Teotia, P., Kela, R., & Kumar, V. (2014). Biodegradation potential of petroleum hydrocarbons by bacteria and mixed bacterial consortium isolated from contaminated sites. Turkish Journal of Engineering and Environmental Sciences,38(1),41–50. https://doi.org/10.3906/muh-1306-4
Rastogi, A., Gautam, S., Kumar, M., & Singh Tomar, R. (2019). Ribosomal Gene Based Comparative Phylogenies for the Genus Mycobacterium: an in-Silicoapproach. Journal of Scientific Research, 63, 89–103.
Shanshoury, A. E. R. E., Sabae, S. Z., Shouny, W. A. E., Shady, A. M. A., & Badr, H. M. (2020). Extracellular biosynthesis of silver nanoparticles using aquatic bacterial isolate and its antibacterial and antioxidant potentials. Egyptian Journal of Aquatic Biology and Fisheries, 24(7 Special issue), 183–201. https://doi.org/10.21608/ejabf.2020.119399
Siagian, U. W. R., Widodo, S., Khoiruddin, Wardani, A. K., & Wenten, I. G. (2018). Oilfield Produced Water Reuse and Reinjection with Membrane. MATEC Web of Conferences, 156, 1–10. https://doi.org/10.1051/matecconf/201815608005
Silambarasan, S., & Abraham, J. (2012). Biosynthesis of silver nanoparticles using the bacteria Bacillus cereus and their antimicrobial property. International Journal of Pharmacy and Pharmaceutical Sciences, 4(SUPPL.1), 536–540.
Silva, T. R., Verde, L. C. L., Santos Neto, E. V., & Oliveira, V. M. (2013). Diversity analyses of microbial communities in petroleum samples from Brazilian oil fields. International Biodeterioration and Biodegradation, 81,57–70. https://doi.org/10.1016/j.ibiod.2012.05.005
Singh, H., Du, J., Singh, P., & Yi, T. H. (2018). Extracellular synthesis of silver nanoparticles by Pseudomonas sp. THG-LS1.4 and their antimicrobial application. Journal of Pharmaceutical Analysis,8(4),258–264. https://doi.org/10.1016/j.jpha.2018.04.004
Singh, P., Kim, Y. J., Singh, H., Wang, C., Hwang, K. H., Farh, M. E. A., & Yang, D. C. (2015). Biosynthesis, characterization, and antimicrobial applications of silver nanoparticles. International Journal of Nanomedicine, 10,2567–2577. https://doi.org/10.2147/IJN.S72313
Sirisha, T., Aleem Bash, P., & Kavitha, B. (2017). Isolation and Characterization of Pathogenic Bacteria from Kundu River Water of Nandyal, Kurnool, Andhra Pradesh, India. Journal of Applied Sciences, 17(9), 475–481. https://doi.org/10.3923/jas.2017.475.481
Syed, B., Nagendra Prasad, M. N., & Satish, S. (2019). Synthesis and characterization of silver nanobactericides produced by Aneurinibacillus migulanus 141, a novel endophyte inhabiting Mimosa pudica L. Arabian Journal of Chemistry, 12(8), 3743–3752. https://doi.org/10.1016/j.arabjc.2016.01.005
Tashi, T., Vishal Gupta, N., & Mbuya, V. B. (2016). Silver nanoparticles: Synthesis, mechanism of antimicrobial action, characterization, medical applications, and toxicity effects. Journal of Chemical and Pharmaceutical Research, 8(2), 526–537.
Tzeneva, V. A. (2006). Kings without crowns: analysis of abundant bacilli in different soil ecosystems.
Valentina, Y. (2022). Optimisation of Reactant Concentration in Biosynthesis of Silver Nanoparticles using Pathogenic Bacteria Isolated from Clinical Sources and their Characterisation: A Recent Study. Innovations in Microbiology and Biotechnology Vol. 3, 7(1), 45–55. https://doi.org/10.9734/bpi/imb/v3/173a
Van Tan, L., Tran, T., & Thi, V. D. (2021). Biosynthesis of silver nanoparticles from Bacillus licheniformis TT01 isolated from quail manure collected in Vietnam. Processes, 9(4), 1–13. https://doi.org/10.3390/pr9040584
Vigneron, A., Alsop, E. B., Lomans, B. P., Kyrpides, N. C., Head, I. M., & Tsesmetzis, N. (2017). Succession in the petroleum reservoir microbiome through an oil field production lifecycle. ISME Journal, 11(9), 2141–2154. https://doi.org/10.1038/ismej.2017.78
Zhou, L., Lu, Y. W., Wang, D. W., Zhang, S. L., Tang, E. G., Qi, Z. Z., Xie, S. N., Wu, J., Liang, B., Liu, J. F., Yang, S. Z., Zhang, J., Gu, J. D., & Mu, B. Z. (2020). Microbial community composition and diversity in production water of a high-temperature offshore oil reservoir assessed by DNA- and RNA-based analyses. International Biodeterioration and Biodegradation, 151(April),104970. https://doi.org/10.1016/j.ibiod.2020.104970