Cryptic diversity of mudskipper genus Boleophthalmus (Gobiiformes: Oxudercidae) from the north coast of East Java, Indonesia
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Abstract. Shabrina FN, Wibowo K, Arisuryanti T. 2024. Cryptic diversity of mudskipper genus Boleophthalmus (Gobiiformes: Oxudercidae) from the north coast of East Java, Indonesia. Biodiversitas 25: 412-420. Mudskippers of genus Boleophthalmus are commonly found in the Indo-Pacific area. This study aimed to examine the diversity of the genus Boleophthalmus from the north coast of East Java Province, Indonesia by employing the mitochondrial COI gene for DNA barcoding and morphological characterization. Ten individuals of this genus were analyzed. According to the similarity percentage evaluated using Basic Local Alignment Search Tool (BLAST) and Barcode of Life Data (BOLD) identification engines, all the individuals were identified as Boleophthalmus boddarti Pallas, 1770. However, phylogenetic analysis revealed that three of the individuals were identified as B. boddarti, and seven were identified as Boleophthalmus pectinirostris Linnaeus, 1758 originated from East Java, which is separated from the clade of B. pectinirostris from East Asia population. These results were supported by the genetic distance of 8.93%-13.81% and the morphological characteristics determined by principal component analysis (PCA). PCA revealed that B. boddarti and B. pectinirostris are primarily distinguished by the number of (longitudinal) scales (69-75 versus 113-123), length of second dorsal fin base (42.3-43.9 versus 38.1-49.0), and caudal fin length (18.1-22.4 versus 17.5-21.6). Further detailed studies are needed to clarify whether the seven individuals belonging to B. pectinirostris complex should be regarded as a new species or a new subspecies.
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References
Abdulmalik-Labe OP, Picart NMR, Francisco MEM, Castillo RMG, & Quilang JP. 2022. DNA barcoding of Glossogobius species (Teleostei: Gobiidae) from major lakes in the Philippines reveals the presence of cryptic species and species complexes. Conservation Genetics Resources 14: 309–320. DOI:10.1007/s12686-022-01278-z
Aji KW, & Arisuryanti T. 2021. Molecular Identification of Mudskipper Fish (Periophthalmus spp.) from Baros Beach, Bantul, Yogyakarta. Journal of Tropical Biodiversity and Biotechnology 6: 1–13. DOI:10.22146/jtbb.66391
Amalia PR, & Budijastuti W. 2022. Morfometri Ikan Gelodok ( Famili Gobiidae ) di Perairan Mangrove Wonorejo Surabaya Morphometry of Mudskipper Fish ( Family Gobiidae ) in Mangrove Wonorejo Surabaya. Lentera Bio 11: 457–472.
Arisuryanti T, Firdaus NUN, & Hakim L. 2020. Genetic Characterization of Striped Snakehead (Channa striata Bloch, 1793) from Arut River, Central Kalimantan Inferred from COI Mitochondrial Gene. AIP Conference Proceedings 2260:. DOI:10.1063/5.0015905
Chakrabarty P. 2010. Zootaxa, Status and phylogeny of Milyeringidae (Teleostei: Gobiiformes)... Zootaxa 2557: 19–28.
Chen H, Polgar G, Yin W, & Fu C-Z. 2014. Cryptic Species and Evolutionary History of the Boleophthalmus. Acta Hydrobiologica Sinica 38: 75–86. DOI:10.7541/2014.10
Cintra AKA, Fitrian T, Oktaviyani S, Subandi R, & Pesilette RN. 2021. Effect of burrows of Boleophthalmus pectinirostris (Linnaeus, 1758) (class actinopterygii family gobiidae) on total organic matter in the mangrove ecosystem of Pandansari Brebes, Central Java. IOP Conference Series: Earth and Environmental Science 744:. DOI:10.1088/1755-1315/744/1/012008
Dahruddin H, Hutama A, Busson F, Sauri S, Hanner R, Keith P, Hadiaty R, & Hubert N. 2016. Revisiting the ichthyodiversity of Java and Bali through DNA barcodes: taxonomic coverage, identification accuracy, cryptic diversity and identification of exotic species. Molecular Ecology Resources 17: 288–299. DOI:10.1111/1755-0998.12528
Fadli N, Mohd Nor SA, Othman AS, Sofyan H, & Muchlisin ZA. 2020. DNA barcoding of commercially important reef fishes in Weh Island, Aceh, Indonesia. PeerJ 8: 1–25. DOI:10.7717/peerj.9641
Febrianti D, Aji KW, Priyono DS, & Arisuryanti T. 2023. Genetic Identification of Two Mudskipper Species (Oxudercidae: Periophthalmus) from Kulon Progo, Special Region of Yogyakarta, Indonesia. Journal of Tropical Biodiversity and Biotechnology 8: 1–15. DOI:10.22146/jtbb.78161
Hammer Ø, Harper DAT, & Ryan PD. 2001. PAST: Paleontological Statistics Software Package For Education And Data Analysis. Palaeontologia Electronica 4: 1–9. http://palaeo-electronica.org/2001_1/past/issue1_01.htm
Hebert PDN, Cywinska A, Ball SL, & DeWaard JR. 2003. Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences 270: 313–321. DOI:10.1098/rspb.2002.2218
Hebert PDN, Stoeckle MY, Zemlak TS, & Francis CM. 2004. Identification of birds through DNA barcodes. PLoS Biology 2:. DOI:10.1371/journal.pbio.0020312
Hidayat S. 2018. Behavior Study of Periophthalmus variabilis and Boleophthalmus boddarti. Journal of Natural Sciences and Mathematics Research 4: 17–22. DOI:10.21580/jnsmr.2018.4.1.10959
Imtiaz A, Mohd Nor SA, & Md. Naim D. 2017. Progress and potential of DNA barcoding for species identification of fish species. Biodiversitas 18: 1394–1405. DOI:10.13057/biodiv/d180415
Islam MJ, Siddiqueki T, Neogi AK, Hossain MY, Hammer M, & Habib KA. 2021. Morphology and DNA barcode confirm three new records of gobies ( Gobiiformes?: Gobiidae ) from Bangladesh. Iranian Society of Ichthyology 8: 114–124. DOI:10.22034/iji.v8i2.584
Jamaluddin JAF, Lavoué S, Alshari NFMAH, Ghazali SZ binti, Ahmad A, Tan A, Leng CL, & Mohd Nor SA. 2022. Reassessing fish diversity of Penang Island’s freshwaters (northwest Peninsular Malaysia) through a molecular approach raises questions on its conservation status. Biodiversity and Conservation 31: 1551–1576. DOI:10.1007/s10531-022-02409-6
Kova?i? M, Dragi?evi? B, Pavi?i? M, Žužul I, & Šegvi?-Bubi? T. 2022. New records of recently described Zebrus pallaoroi (Actinopterygii: Gobiiformes: Gobiidae) with notes on its morphology, ecology, and molecular identification. Acta Ichthyologica et Piscatoria 52: 13–19. DOI:10.3897/AIEP.52.79723
Kumar S, Stecher G, Li M, Knyaz C, & Tamura K. 2018. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35: 1547–1549. DOI:10.1093/molbev/msy096
Murdy EO. 1989. A taxonomic revision and cladistic analysis of the oxudercine gobies (Gobiidae: Oxudercinae). Records of the Australian Museum, Supplement 11: 1–93. DOI:10.3853/j.0812-7387.11.1989.93
Nehal N, Choudhary B, Nagpure A, & Gupta RK. 2021. DNA barcoding: a modern age tool for detection of adulteration in food. Critical Reviews in Biotechnology 41: 767–791. DOI:10.1080/07388551.2021.1874279
Nelson JS. 2016. Fishes of the World Fifth Edition. John Wiley & Sons, Inc.
Polgar G, Ghanbarifardi M, Milli S, Agorreta A, Aliabadian M, Esmaeili HR, & Khang TF. 2017. Ecomorphological adaptation in three mudskippers (Teleostei: Gobioidei: Gobiidae) from the Persian Gulf and the Gulf of Oman. Hydrobiologia 795: 91–111. DOI:10.1007/s10750-017-3120-8
Polgar G, Jaafar Z, & Konstantinidis P. 2013. A new species of mudskipper, Boleophthalmus Poti (teleostei: Gobiidae: Oxudercinae) from the gulf of papua, papua new guinea, and a key to the genus. Raffles Bulletin of Zoology 61: 311–321.
Pormansyah, Iqbal M, Putra S, Setiawan A, Yustian I, & Zulkifli H. 2021. Similar but Different: Differences Hitherto Overlooked between Boleophthalmus pectinirostris and B. boddarti (Teleostei: Oxudercinae) in Indonesian Waters. Oceanography & Fisheries Open Access Journal 13: 1–6. DOI:10.19080/ofoaj.2021.13.555860
Rhaifa FA, Audrea DJ, Hakim L, & Arisuryanti T. 2021. Dna barcode of barred mudskipper (periophthalmus argentilineatus valenciennes, 1837) from tekolok estuary (west nusa tenggara, indonesia) and their phylogenetic relationship with other indonesian barred mudskippers. Journal of Tropical Biodiversity and Biotechnology 6: 1–13. DOI:10.22146/JTBB.59702
Ridho MR, Patriono E, & Solikha M. 2019. Food habits of three species of mudskippers in the Musi River Estuary, South Sumatra, Indonesia. Biodiversitas Journal of Biological Diversity 20: 2368–2374. DOI:10.13057/biodiv/d200835
Suchard MA, Lemey P, Baele G, Ayres DL, Drummond AJ, & Rambaut A. 2018. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10. Virus Evolution 4: 1–5. DOI:10.1093/ve/vey016
Sunarni, Melmambessy EHP, Mote N, Rahmatia, & Hamuna B. 2019. Length-weight relationship and condition factor of Mudskipper Boleophthalmus pectinirostris from Maro Estuary, Merauke Regency, Papua. Journal of Ecological Engineering 20: 199–204. DOI:10.12911/22998993/110841
Thacker CE, Geiger DL, & Unmack PJ. 2022. Species delineation and systematics of a hemiclonal hybrid complex in Australian freshwaters (Gobiiformes: Gobioidei: Eleotridae: Hypseleotris). Royal Society Open Science 9:. DOI:10.1098/rsos.220201
Ward RD, Zemlak TS, Innes BH, Last PR, & Hebert PDN. 2005. DNA barcoding Australia’s fish species. Philosophical Transactions of the Royal Society B: Biological Sciences 360: 1847–1857. DOI:10.1098/rstb.2005.1716
Zemlak TS, Ward RD, Connell AD, Holmes BH, & Hebert PDN. 2009. DNA barcoding reveals overlooked marine fishes. Molecular Ecology Resources 9: 237–242. DOI:10.1111/j.1755-0998.2009.02649.x
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