Genetic diversity of rose apple (Syzygium samarangense) varieties based on ISSR molecular markers

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DOI https://doi.org/10.13057/biodiv/d250517
Issue
Vol. 25 No. 5 (2024)
Section
Articles
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This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.

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PHAN THI THU HIEN ♥
Faculty of Biology and Agricultural Engineering, Hanoi Pedagogical University. 2 Xuan Hoa, Phuc Yen, Vinh Phuc 280000, Vietnam
VU THI THUY HANG
Faculty of Agronomy, Vietnam National University of Agriculture. Trau Quy, Gia Lam, Hanoi 100000, Vietnam
LE THI TUYET CHAM
Faculty of Agronomy, Vietnam National University of Agriculture. Trau Quy, Gia Lam, Hanoi 100000, Vietnam

Abstract

Abstract. Hien PTT, Hang VTT, Cham LTT. 2024. Genetic diversity of Rose apple (Syzygium samarangense) varieties based on ISSR molecular markers. Biodiversitas 25: xxxx. Rose apple (Syzygium samarangense) exhibits a rich diversity in its varieties, metabolic compounds, and biological activities. Genetic diversity studies are crucial in understanding plant species taxonomy and evolutionary history. They provide a roadmap for researchers to trace the relationships between different varieties and offer insights into the evolutionary processes that have shaped the diversity within the species. Many traditional or indigenous varieties of plants may harbor unique traits adapted to specific local conditions. This study, therefore, holds immense value as it aims to evaluate the genetic relationship among rose apple varieties in Vietnam using morphological characteristics and ISSR markers. Sixteen local varieties of rose apple were collected from provinces in Vietnam for this purpose. The morphological characteristics of leaves and fruits were compared among samples, and the genetic diversity was evaluated using ISSR markers. The results revealed significant morphological diversity in the leaf base, blade shape, leaf color, and fruit shape and size. Based on the DNA profiles of 15 ISSR markers, 102 amplicons were produced, and the percentage of polymorphism ranged from 57 to 100%. The dendrogram constructed using the UPGMA method classified these varieties into two main clusters with a genetic diversity of 64%. Such comprehensive information underscores the genetic diversity among S. samarangense, thereby contributing to the germplasm resources for future plant breeding programs.

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References
Angeliena A, Ma’ruf A, Sidiq HA, Anggraito YU, Habibah NA, Huyop FZ, Retnoningsih A. 2019. The diversity of superior Indonesian durians based on molecular markers. In AIP Conference Proceedings 2155(1): 020043. https://doi.org/10.1063/1.5125547
Ba N. 2010. Plant morphology, 2nd edition. Vietnam Education Publishing House Limited Company. Thai Nguyen City, 351 pages. DOI: https://doi.org/10.25073/2588-1132/vnumps.4322
Cheong MLS and Ranghoo-Sanmukhiya VM. 2013. Phylogeny of Syzygium species using morphological, RAPD and ISSR Markers. International Journal of Agriculture and Biology 15: 511?516. https://www.fspublishers.org/Issue.php?no_download=published_papers/84686_..pdf&issue_id=180
Chua LK, Lim CL, Ling AP, Chye SM, Koh RY. 2019. Anticancer potential of Syzygium species: a review. Plant Foods for Human Nutrition 74(1): 18-27. DOI: 10.1007/s11130-018-0704-z
Elias MS, Al-Jubouri KD. 2022. Investigate genetic relation among watermelon cultivars using molecular DNA markers. Iraqi Journal of Agricultural Sciences 53(3): 712–723. DOI: https://doi.org/10.36103/ijas.v53i3.1581
Galan SV. 1989. Litchi cultivation (in Spanish) (menini, U.G., FAO Coordinator). FAO Plant production and protection paper No.83, FAO, Rome, Italy. https://www.fao.org/faolex/results/details/en/c/LEX-FAOC027516/
Idris NS, Khandaker MM, Rashid ZM., Majrashi A, Alenazi MM., Adnan AFN, Mahmud K, Mat N. 2023. Discrimination of Syzygium samarangense cv. ‘Giant Green’ Leaves at Different Maturity Stages by FTIR and GCMS Fingerprinting. Horticulturae 9(5): 609. https://doi.org/10.3390/horticulturae9050609
Kadri A, Saleh S, Elbitar A, Chehade A. 2021. Genetic diversity assessment of ancient mulberry (Morus spp.) in Lebanon using morphological, chemical and molecular markers (SSR and ISSR). Advances in Horticultural Science 35(3): 243–253. DOI: https://doi.org/10.36253/ahsc-8376
Khachtib Y, Bouda S, Bella YA, Zinelabidine L, Haddioui A. 2023. Use of ISSR markers for assessing genetic diversity of apple (Malus x domestica) cultivars growing in Morocco. International Journal of Plant Research 36. DOI:10.1007/s42535-023-00712-3
Merrick L, Campbell A, Muenchrath D, and Fei S. 2016. Mutations and Variation. In W. P. Suza, & K. R. Lamkey (Eds.), Crop Genetics. Iowa State University Digital Press. DOI: 10.31274/isudp.2023.130
Mothina N, Yapwattanaphun C. 2017. Effect of bagging colour on fruit quality of wax apple (Syzygium samarangense) (Blume) Merr. & Perry ‘Thabthimchan’. Acta Horticulturae (1166): 191–194. DOI: 10.17660/ActaHortic.2017.1166.27
Ngan NT. 2023. Preserving An Phuoc rose apples by dipping method with the addition of phenolic extract from cashew nut apple. Journal of Science and Technology 62. DOI: https://doi.org/10.46242/jstiuh.v62i02.4785
Parnell J, Rich T, McVeigh A, Lim A, Morris D, Wong Z. 2013. The effect of preservation methods on plant morphology. TAXON 62 (6): 1259–1265. DOI:10.12705/626.3
Samarina LS, Malyarovskaya VI, Reim S, Koninskaya NG, Matskiv A, Tsaturyan GA, Rakhmangulov RS, Shkhalakhova RM, Shurkina ES, Kulyan RV, et al. 2021. Genetic diversity in Diospyros germplasm in the Western Caucasus based on SSR and ISSR polymorphism. Biology 10(4):341. DOI: https://doi.org/10.3390/biology10040341
Sevindik E, Uysal H, Murathan ZT. 2018. Genetic diversity based on ISSR markers of apple genotypes in Ardahan/Turkey. Notulae Scientia Biologicae 10(4): 554–558. DOI: https://doi.org/10.15835/nsb10410347
Shabaraya A, Satish S. 2021. Rose apple fruit: a pharmacological review. World Journal of Pharmacy and Pharmaceutical Sciences 10(4): 842-849. DOI:10.20959/wjpps20214-18707
Shankar C, Anjani K, 2023. Morpho-Molecular Genetic Diversity Analysis of Little Millet (Panicum sumatrense) using Yield Attributing Traits and ISSR Markers to Evaluate its Performance as a Summer Crop. Environment and Ecology 41 (3B): 1788—1798. https://www.cabidigitallibrary.org/doi/pdf/10.5555/20231601254
Sirisha KS, Shreeja K. 2019. Rose apple: A systematic review. The Pharma Innovation Journal 8(7): 673-676. https://www.thepharmajournal.com/archives/2019/vol8issue7/PartL/8-7-104-823.pdf
Sonawane MS. 2018. Dietary benefits of watery rose apple (Syzygium aqueum (Burm. f.) Alston). International Archive of Applied Sciences and Technology 9:126–129. DOI: 10.15515/iaast.0976-4828.9.4.126129
Sun Z, Huang Q, Feng C. 2020. Complete chloroplast genome sequence of the rose apple, Syzygium jambos (Myrtaceae). Mitochondrial DNA B Resour 5(3): 3460-3462. DOI: 10.1080/23802359.2020.1826000
Van HT, Tran QT, Tran TTH, Tran NB, Huynh NT, Nguyen KB, Phan UTX. 2020. Chemical constituents and bacterial activity of essential oils of five wax apples (Syzygium samarangense) from Dong Thap Province, Vietnam. Agriculturae Conspectus Scientificus 85(2): 145-152. https://acs.agr.hr/acs/index.php/acs/article/view/1731
Vietthe H, Ngantram T, Tu N. 2019. Genetic characterization of mango accessions through RAPD and ISSR markers in Vietnam. https://www.researchgate.net/publication/340296508
Yassir M, Bakrim WB, Mahmoud MF, Drissi B, Kouisni L, Sobeh M. 2022. Watery rose apple: a comprehensive review of its traditional uses, nutritional value, phytochemistry, and therapeutic merits against inflammation-related disorders. Oxid Med Cell Longev, 7502185. DOI: 10.1155/2022/7502185
Zatybekov A, Yermagambetova M, Genievskaya Y, Didorenko S, Abugalieva S. 2023. Genetic Diversity Analysis of Soybean Collection Using Simple Sequence Repeat Markers. Plants 12(19):3445. https://doi.org/10.3390/plants12193445.