Genetic structure and current distribution of Liriomyza huidobrensis, L. sativae and L. trifolii (Diptera: Agromyzidae) on vegetable crops in Bali, Indonesia
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Abstract. Utama IWEK, Supartha IW, Yuliadhi KA, Sudiarta IP, Yudha IKW, Saleh S, Wahyuni S, Wiradana PA. 2024. Genetic structure and current distribution of Liriomyza huidobrensis, L. sativae and L. trifolii (Diptera: Agromyzidae) on vegetable crops in Bali, Indonesia. Biodiversitas 25: 2104-2114. Liriomyza spp. (Diptera: Agromizidae) is a polyphagous pest that attacks various types of vegetable and ornamental plants throughout the world. The most damaging species are Liriomyza huidobrensis (Blanchard), Liriomyza sativae (Blanchard), and Liriomyza trifolii (Burgess). There have been no reports regarding mapping of population distribution and population genetics of Liriomyza in the Bali region using the Cytochrome C Oxidase Subunit I (COI) approach. This research aims to map the population and genetic structure of L. huidobrensis, L. sativae and L. trifolii on vegetable plants in Bali. This research uses a purposive sampling method which represents vegetable plantings in each district and city in Bali Province. Identification of the Liriomyza spp. gene structure using the COI approach using LCO and HCO primers. The results of the research found that the spatial distribution of invasive leafminer fly species, namely L. sativae and L. trifolii, was evenly distributed throughout the city districts in Bali. The distribution pattern of L. trifolii is uniform with an S2/X value <1, while L. huidobrensis is found in the highland areas with a clustered distribution pattern with an S2/. The genetic distance between the three Liriomyza species found in vegetable plants in Bali is much longer. This means that the three Liriomyza species show very high levels of genetic differentiation in mitochondrial and nuclear genes, and differentiation between species in nuclear genes. This genetic variation can influence the ability of insects to quickly adapt to new environments and contribute to population dynamics and dispersal capacity.
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References
Blacket MJ, Rice AD, Semeraro L, Malipatil MB. 2015. DNA-based identifications reveal multiple introductions of the vegetable leafminer Liriomyza sativae (Diptera: Agromyzidae) into the Torres Strait Islands and Papua New Guinea. Bull Entomol Res. 105(5): 533-44. DOI: 10.1017/S0007485315000383.
Capinha C, Ro¨dder D, Pereira HM, Kappes H. 2014. Response of non-native European terrestrial gastropods to novel climates correlates with biogeographical and biological traits. Glob. Ecol. Biogeogr. 23: 857–866. DOI: 10.1111/geb.12176.
Chang YW Chen JY, Zheng SZ, Gao Y, Chen Y, Deng Y, Du YZ. 2020. Revalidation of morphological characteristics and multiplex PCR for the identification of three congener invasive Liriomyza species (Diptera: Agromyzidae) in China. PeerJ. 8:e10138. DOI: 10.7717/peerj.10138.
Chen JY, Chang YW, Tang XT, Zheng SZ, Du YZ. 2019. Population genetics of Liriomyza trifolii (Diptera: Agromyzidae) and comparison with four Liriomyza species in China based on COI, EF-1a and microsatellites loci. Sci Rep. 9(1):17856. DOI: 10.1038/s41598-019-53886-9.
Dantas J, Motta IO, Vidal LA, Nascimento EFMB, Bilio J, Pupe JM, Veiga A, Carvalho C, Lopes RB, Rocha TL, Silva LP, Pujol-Luz JR, Albuquerque ÉVS. 2021. A Comprehensive Review of the Coffee Leaf Miner Leucoptera coffeella (Lepidoptera: Lyonetiidae)-A Major Pest for the Coffee Crop in Brazil and Others Neotropical Countries. Insects. 12(12):1130. DOI: 10.3390/insects12121130.
Finch DM, Butler JL, Runyon JB, Fettig CJ, Kilkenny FF, Jose S, Frankel SJ, Cushman SA, Cobb RC, Dukes JS, Hicke JA, Amelon SK. 2021. Effects of Climate Change on Invasive Species. Invasive Species in Forests and Rangelands of the United States. Springer, Cham. DOI:10.1007/978-3-030-45367-1_4.
Guo J, Li J, Massart S, He K, Francis F, Wang Z. 2023. Analysis of the Genetic Diversity of Two Rhopalosiphum Species from China and Europe Based on Nuclear and Mitochondrial Genes. Insects. 14(1):57. DOI: 10.3390/insects14010057.
Hamid, Supartha IW, Susila IW, Sudiarta IP. 2018. Morphological and molecular characteristics of Liriomyza sp. (Diptera: Agromyzidae) on onion plants(Allium cepa L.) in Bali. Asian J Agri & Biol. 6(4): 524-529.
Hikmawati A, Hasrianty, Shahabuddin. 2013. Kajian Jenis Pengorok Daun (Liriomyza sp.) (Diptera: Agromizydae) Pada Berbagai Tanaman Inang Di Lembah Palu. Agrotekbis 1 (3) : 204-210. [Indonesian]
Kirichenko N, Augustin S, Kenis M. 2018. Invasive leafminers on woody plants: a global review of pathways, impact, and management. Journal of Pest Science. 92; 93–106. DOI:10.1007/s10340-018-1009-6.
Lonsdale O, Murphy ST, Scheffer SJ. 2023. Agromyzidae (Diptera) Plant Pests. Advanced Books. DOI:10.3897/ab.e108410.
Matumba TG, Oliver J, Barker NP, McQuaid CD, Teske PR. 2020. Intraspecific mitochondrial gene variation can be as low as that of nuclear rRNA. F1000Res. 9:339. DOI: 10.12688/f1000research.23635.2.
Muiruri EW, Barantal S, Iason GR, Salminen JP, Perez-Fernandez E, Koricheva J. 2019. Forest diversity effects on insect herbivores: do leaf traits matter? New Phytol. 221(4):2250-2260. DOI: 10.1111/nph.15558.
Nakamura S, Masuda T, Mochizuki A, Konishi K, Tokumaru S, Ueno K, Yamaguchi T. 2013. Primer design for identifying economically important Liriomyza species (Diptera: Agromyzidae) by multiplex PCR. Mol Ecol Resour. 13(1): 96-102. DOI: 10.1111/1755-0998.
Nopriawansyah, Rauf A, Kusumah YM, Nurmansyah A, Koesmaryono Y. 2019. Genetic variation among the geographic population of Cassava mealybug Phenacoccus manihoti (Hemiptera: Pseudococcidae) in Indonesia inferred from mitochondrial COI gene sequence. Biodiversitas. 20 (9): 2685-2692. DOI: 10.13057/biodiv/d200933.
Petit-Marty N, Vázquez-Luis M, Hendriks IE. 2020. Use of the nucleotide diversity in COI mitochondrial gene as an early diagnostic of conservation status of animal species. Conservation Letters 14(1): e12756. DOI:10.1111/conl.12756.
Rauf A. 1995. Liriomyza: hama pendatang baru di Indonesia. Buletin Hama dan Penyakit Tumbuhan 8(1): 46-48. [Indonesian]
Rodríguez-Castañeda G, MacVean C, Cardona C, Hof AR. 2017. What Limits the Distribution of Liriomyza huidobrensis and Its Congener Liriomyza sativae in Their Native Niche: When Temperature and Competition Affect Species’ Distribution Range in Guatemala. J. Insect Sci. 17(4):88. DOI: 10.1093/jisesa/iex059.
Salazar-Mendoza P, Peralta-Aragón I, Romero-Rivas L, Salamanca J, Rodriguez-Saona C. 2021. The abundance and diversity of fruit flies and their parasitoids change with elevation in guava orchards in a tropical Andean forest of Peru, independent of seasonality. PLoS One. 16(4):e0250731. DOI: 10.1371/journal.pone.0250731.
Shi A, Mou B. 2016. Genetic diversity and association analysis of leafminer (Liriomyza langei) resistance in spinach (Spinacia oleracea). Genome. 59(8):581-8. DOI: 10.1139/gen-2016-0075.
Song Z, Ze S, Liu C and Chen B. 2023. New insights into the genetic structure of the outbreak-prone bamboo grasshoppers. Front. Ecol. Evol. 11:1062857. DOI: 10.3389/fevo.2023.1062857
Spencer KA, Steyskal GC. 1986. Manual of the Agromyzidae (Diptera) of the United States. U.S.D.A. Agriculture Handbook, 638, 478 pp. DOI:10.5962/bhl.title.119606.
Supartha IW, Bagus IGN, Sudiarta P. 2005. Population abundance of Liriomyza spp. (Diptera: Agromyzidae) and parasitoids on highland vegetables crop. Agritrop 24 (2): 51-5.9 [Indonesian]
Supartha IW, Susila IW, Rauf A, Shepard BM, Utama IWEK, Sandikayasa IW, Yudha IKW, Wiradana PA. 2023. Evaluation of the Community Structure Leafminer Fly, Liriomyza spp. (Diptera: Agromyzidae) and Their Parasitoids on Various Host Plant Families in Bali Province. HAYATI Journal of Biosciences, 30(3); 432-444. DOI:10.4308/hjb.30.3.432-444.
Tang, X. T., Ji, Y., Chang, Y. W. & Du, Y. Z. 2016. Population genetic structure and migration patterns of Liriomyza sativae in China: moderate subdivision and no Bridgehead efect revealed by microsatellites. B. Entomol. Res. 106, 114–123.
Uffelmann E, Huang QQ, Munung NS, de Vries J, Okada Y, Martin AR, Martin HC, Lappalainen T, Posthuma D. 2021. Genome-wide association studies. Nat Rev Methods Primers. 1; 59.DOI: 10.1038/s43586-021-00056-9.
Vera-Escalona I, Brante A. 2024. A simulation study evaluating how population survival and genetic diversity in a newly established population can be affected by propagule size, extinction rates, and initial heterozygosity. PeerJ. 12:e16628. DOI: 10.7717/peerj.16628.
Vihinen M. 2021. Functional effects of protein variants. Biochimie. 180: 104-120. DOI: 10.1016/j.biochi.2020.10.009.
Wahyuni S, Supartha IW, Ubaidillah R, Wijaya IN. 2017. Parasitoid community structure of leaf miner Liriomyza spp. (Diptera: Agromyzidae) and the rate of parasitization on vegetable crops in Lesser Sunda Islands, Indonesia. Biodiversitas. 18 (2): 593-600. DOI: 10.13057/biodiv/d180221
Wang G, Hou Y, Zhang X, Zhang J, Li J, Chen Z. 2017. Strong population genetic structure of an invasive species, Rhynchophorus ferrugineus (Olivier), in southern China. Ecology and Evolution. 7 (24): 10483-11303. DOI: 10.1002/ece3.3599.
Webster MT, Beaurepaire A, Neumann P, Stolle E. 2023. Population Genomics for Insect Conservation. Annual Review of Animal Biosciences. 11:115–140. DOI: 10.1146/annurev-animal-122221-075025.
Weintraub PG, Scheffer SJ, Visser D, Valladares G, Soares Correa A, Shepard BM, Rauf A, Murphy ST, Mujica N, MacVean C, Kroschel J, Kishinevsky M, Joshi RC, Johansen NS, Hallett RH, Civelek HS, Chen B, Metzler HB. 2017. The Invasive Liriomyza huidobrensis (Diptera: Agromyzidae): Understanding Its Pest Status and Management Globally. J Insect Sci. 17(1): 28. DOI: 10.1093/jisesa/iew121.
Xuan JL, Scheffer SJ, Lonsdale O, Cassel BK, Lewis ML, Eiseman CS, Liu WX, Wiegmann BM. 2023. A genome-wide phylogeny and the diversification of genus Liriomyza (Diptera: Agromyzidae) inferred from anchored phylogenomics. Systematic Entomology, 48(1), 178–197. DOI:10.1111/syen.12569.
Xu X, Ridland PM, Umina PA, Gill A, Ross PA, Pirtle E, Hoffmann AA. 2021. High Incidence of Related Wolbachia across Unrelated Leaf-Mining Diptera. Insects. 12(9): 788. DOI:10.3390/insects12090788.
Yong-xuan L, Su-jie D, Yu-jun Z, Qi-jing W, Qiong Z, Fang-hao W, Jian-yang G, Wan-xue L. 2023. Molecular phylogeny and identification of agromyzid leafminers in China, with a focus on the worldwide genus Liriomyza (Diptera: Agromyzidae). Journal of Integrative Agriculture. 22(10): 3115-3134. DOI: 10.1016/j.jia.2023.04.030.
Yuliadhi KA, Supartha IW, Darmiati NN, Bangun A, Yudha IKW, Utama IWEK, Wiradana PA. 2021. Short Communication: Silba adipata (Diptera: Lonchaeidae) parasitoids on cayenne pepper (Capsicum frutescens) in Bali, Indonesia. Biodiversitas. 22(9):3929-3935. DOI: 10.13057/biodiv/d220939.
Yu-Jun Z, Su-Jie D, Li-Ting P, Yu-Sheng W, Fu-Lian W, Wan-Xue L. 2020. Analysis of the genetic diversity of geographical populations of Liriomyza chinensis (Diptera: Agromyzidae) in China based on mtCOI gene sequence[J].Acta Entomologica Sinica. 63(6): 769-778. DOI: 10.16380/j.kcxb.2020.06.013.
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