Characteristics and antibacterial potency of actinomycetes isolated from nypa palm litter

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RIKHSAN KURNIATUHADI
TRI RIMA SETYAWATI
ARI HEPI YANTI
ANNISA FADHILA

Abstract

Abstract. Kurniatuhadi R, Setyawati TR, Yanti AH, Fadhila A. 2024. Characteristics and antibacterial potency of actinomycetes isolated from nypa palm litter. Biodiversitas 25: 3449-3459. Actinomycetes are ubiquitous bacteria which are known to produce secondary metabolites with bioprospecting potential as antibacterial agents. This research aimed to qualitatively determine the density and diversity of this group, as well as the antibacterial potential of actinomycetes from nypa palm (Nypa fruticans (Thunb.) Wurmb.) litter. Isolation was performed using the pretreatment pour plate method, which involved wet heat treatment using a selective starch casein agar (SCA) medium. Actinomycetes density was calculated using the standard plate count (SPC). The isolated microorganisms where characterized based on macroscopic, microscopic characters, and biochemical tests. Potential antibacterial activity against Aeromonas sp. NrBF9 was qualitatively assessed employing the cross-streak method. The results showed that actinomycetes accounted for 11% of the total bacterial density. Macroscopic screening of the isolates’ colony characteristics revealed the successful retrieval and culture of eight isolates. All isolates exhibited similar characteristics to those of the genus Pseudonocardia. Six out of the eight isolates, coded as TCN1, TCN2, TCN4, TCN5, TCN6, and TCN7, could inhibit the activity of Aeromonas sp. NrBF9, resulting in the formation of a clear zone surrounding of colonies. The six isolates of Pseudonocardia with antibacterial activity have the potential to be developed as feed additives for nypa palm worm aquaculture.

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Abdullah A, Almuhardi I, Antoni, Rahmawati. 2020. Aktivitas antibakteri actinomycetes asal Desa Cempaka Kapuas Hulu Kalimantan Barat terhadap enteropatogenik gastroenteritis. Al-Kauniyah: Jurnal Biologi 13(1): 20-30. DOI: http://dx.doi.org/10.15408/kauniyah.v13i1.11731

Barka EA, Vatsa P, Sanchez, Vailant NG, Jacquard C, Klenk HP, Clement C, Ouhdouch Y, Wezel GP. 2016. Taxonomy, physiology and natural products of actinobacteria. Microbiol. Mol. Biol. Rev. 80(1): 1-43. DOI: 10.1128/MMBR.00019-15

Brink B. 2010. Urease test protocol. American Society for Microbiology, Washington DC.

Cappuccino JG, Sherman N. 2014. Microbiology: A Laboratory Manual (10th Edition). Person Education, USA.

Card S, Jhonson L, Teadale S, Caradus J. 2016. Deciphering endophyte behavior: the link between endophyte biology and efficacious biological control agents. FEMS Microbiol Ecol. 92(8). DOI: 10.1093/femsec/fiw114

Glasby CJ, Miura T, Nishi E. (2007). A new species of' Namalycastis (Polychaeta: Nereididae: Namanereidinae) from the shores of South-East Asia. Beagle: Records of the Museums and Art Galleries of the Northern Territory 23:21-27. DOI:10.5962/p.320165

Holt JG, Krieg NR, Sneath PAH, Staley JT, Williams ST. 1994. Bergey’s Manual of Determinative Bacteriology (9 th Edition). Williams & Wilkins, Baltimore.

Huang Y, Goodfellow M. 2015. Bergey’s Manual of Systematics of Archaea and Bacteria. 1-32. DOI: 10.1002/9781118960608.gbm00186

Huang Y, Wang L, Lu Z, Tan GYA, Goodfellow M. 2002. Proposal to Combine The Genera Actinobispora and Pseudonocardia zijingensis sp. nov. IJSEM 52(3): 977-982. DOI: 10.1099/00207713-52-3-977

Jafari N, Behroozi R, Farajzadeh D, Farsi M, Noghabi AK. 2014. Antibacterial activity of Pseudonocardia sp. JB05 A rare salty soil actinomycetes against Staphylococcus aureus. Biomed Res Int 1-7. DOI: 10.1155/2014/182945

Junardi, Riyandi. 2020. Sintasan dan pertumbuhan larva cacing nipah Namalycastis rhodochorde (polychaeta: Nereididae) pada budidaya dengan dua sumber pakan berbeda. Jurnal Akuakultur Rawa Indonesia. 8(2): 193-204. DOI: https://doi.org/10.36706/jari.v8i2.11715

Katili AS, Retnowati Y. 2017. Isolation of actinomycetes from mangrove ecosystem in Torosiaje, Gorontalo, Indonesia. Biodiversitas 18(2): 826-833. DOI https://doi.org/10.13057/biodiv/d180259

Kapoor G, Saigal S, Elongavan A. 2017. Action and resistance mechanism of antibiotic: A guide from clinicans. J Anaesthesiol Clin Pharmacol. 33(3): 300-305. https://doi.org/10.4103%2Fjoacp.JOACP_349_15

Lestari S, Mukarlina, Kurniatuhadi R (2019). Identifikasi dan Deteksi Aktivitas Daya Hambat Bakteri Actinomycetes yang Diisolasi dari Tanah Gambut di Desa Tajok Kayong Kalimantan Barat. Protobiont. 8(1). https://dx.doi.org/10.26418/protobiont.v8i1.30843

Li Q, Chen X, Jiang Y, Jiang C. 2016. Morphological identification of actinobacteria. InTech 59-86. DOI: 10.5772/61461

Mohseni M, Norouzi H, Hamedi J, Roohi A. 2013. Skrining of antibacterial producing actinomycetes from sediments of The Caspian Sea. Int J Mol Cell Med. 2(2): 64-71. http://www.ncbi.nlm.nih.gov/pmc/articles/pmc3920526/

Nikou MM, Ramezani M, Harirchi S, Makzoom S, Amoozegar MA, Sas F. 2017. Salinifilum gen. nov., with description of Salinifilum proteinilyticum sp. nov., an extremely halophilic actinomycete isolated from Meighan wetland, Iran, and reclassification of Saccharopolyspora aidingensis as Salinifilum aidingensis comb. nov. and Saccharopolyspora ghardaiensis as Salinifilum ghardaiensis comb. nov. International Journal of Systematic and Evolutionary Microbiology, 67: 4221–4227. https://doi.org/10.1099/ijsem.0.002286

Nofiani R, Rizky R, Briliantoro R, Ardiningsih P. 2022. Anti-bacteria and toxicity potential of a rare actinobacterium Pseudonocardia sp. SM1A, isolated from Mangrove Park, West Kalimantan, Indonesia. Biodiversitas 23(1): 453-458. https://doi.org/10.13057/biodiv/d230148

Nurkanto A. 2008. Keragaman aktinomisetes kepulauan waiego, kabupaten raja ampat, papua dan potensinya sebagai pendegradasi selulosa dan pelarut fosfat. Berita Biologi 9(1): 9-18. DOI: https://doi.org/10.14203/beritabiologi.v9i1.776

Park SW, Park ST, Lee JE, Kim YM. 2008. Pseudonocardia carboxydivorans sp. nov., A carbon monoxide-oxiding actinomycete and an emended description of the genus Pseudonocardia. Int J Syst Evol Microbiol. 27(1): 2475-2478. https://doi.org/10.1099/ijs.0.65765-0

Parra J, Soldatou S, Rooney LM, Duncan KR. 2021. Pseudonocardia abyssalis sp. Nov. and Pseudonocardia oceani sp.nov. two novel Actinomycetes isolated from the deep Soutern Ocean. Int J Syst Evol Microbiol. 71(9). https://doi.org/10.1099/ijsem.0.005032

Prabahar V, Dube S, Reddy GSN, Shivaji S. 2004. Pseudonocardia antartica sp. nov. An Actinomycetes from McMurdo Dry Valleys, Antartica. Syst Appl Microbiol. 27(1): 66-71. https://doi.org/10.1078/0723-2020-00249

Putra HW, Kurniatuhadi R, Setyawati TR, Yanti AH. 2024. Antibacteria activity of Streptomyces sp. NrASA6 culture extract isolated from nypa palm worm substrate againts Escherichia coli, Staphylococcus aureus, and Aeromonas sp. NrBF9. Jurnal Biologi Tropis, 24(1): 252-260. https://doi.org/10.29303/jbt.v24i1.6469.

Reichert K, Lipski A, Pradella S, Stackebrandt E, Altendorf, K. 1998. Pseudonocardia sp. nov. and Pseudonocardia sulfidoxydans sp. nov. two new dimethyl disulfide-degrading Actinomycetes and emended description of the genus Pseudonocardia. Int J Syst Bacteriol. 48, 441-449. DOI: 10.1099/00207713-48-2-441

Riahi HS, Heidarieh P, Fatahi-Bafghi M. 2021. Genus Pseudonocardia: What we know about its biological properties, abilities and current application in biotechnology. Journal of Applieed Microbiology, 132: 890–906. https://doi.org/10.1111/jam.15271

Rosmine E, Varghese SA. 2016. Isolation of actinomycetes from mangrove and estuarine sediments of Cochin and screening for antimicrobial activity. Journal of Coastal Life Medicine 4(3): 207-210. doi: 10.12980/jclm.4.2016j5-148

Sakiyama Y, Tao NK, Vinh HV, Giang NM, Miyadoh SHDV, Ando K. 2010. Pseudonocardia babensis sp. nov., isolated from plant litter. Int J Syst Evol Microbiol. 60(10): 2336-2340. https://doi.org/10.1099/ijs.0.018127-0

Setyawati TR, Yanti AH, Kurniatuhadi R. 2020. pathogenicity profile of indigenous bacteria isolated from gastrointestinal tracts and fecal pellets of nipah worm (Namalycastis rhodochorde). IOP Conference Series: Earth and Environmental Science. 550 (1).

Tian XP, Long LJ, LI SM, Zhang J, Xu Y, He J, Zhang S. 2013. Pseudonocardia antitumoralis sp. nov., a deoxynbuqoinone-producing Actinomycete isolated from a deep-sea sediment. Int J Syst Evol Microbiol. 63(Pt 3), 893-899. https://doi.org/10.1099/ijs.0.037135-0

Wadetwat RN, Patil AT. 2013. Isolation and characterization of bioactive Actinomycetes from soil in and around Nagpur. IJPSR. 4(4): 1428-1433. https://ijpsr.com/bft-article/isolation-and-characterization-of-bioactive-actinomycetes-from-soil-in-and-around-nagpur/#:~:text=http%3A//dx.doi.org/10.13040/IJPSR.0975%2D8232.4(4).1428%2D33

Yanti A, Setyawati TR, Kurniatuhadi R. 2019. Composition and characterizations of actinomycetes isolated from nipah mangrove sediment, gastrointestinal and fecal pellets of nipah worm (Namalycastis rhodhocorde). IOP Conf. Series: Earth and Environmental Science 550 (1).

Zainal Abidin ZA, Malek NA, Zainuddin Z, Chowdhury AJK. 2016. Selective isolation and antagonistic activity of actinomycetes from mangrove forest of Pahang, Malaysia. Frontiers in Life Science 9(1): 24-31. https://doi.org/10.1080/21553769.2015.1051244

Zainal Abidin ZA, Chowdury AJK, Malek NA, Zainuddin Z. 2018. Diversity, antimicrobial capabilities, and biosynthetic potential of mangrove actinomycetes from Coastal Water in Pahang, Malaysia. Journal of Coastal Research (82): 174-179. https://doi.org/10.2112/SI82-025.1

Zhang, G., Wang, L., Li, J. & Zhou, Y. 2017. Pseudonocardia profundimaris sp. nov., isolated from marine sediment. International Journal of Systematic and Evolutionary Microbiology, 67: 1693–1697. https://doi.org/10.1099/ijsem.0.001849

Zhao GZ, Zhu WY, Li J, Xie Q, Xu LH, Li, WJ. 2011. Pseudonocardia serianimatus sp. nov., a novel actinomycete isolated from the surface-sterilized leaves of Artemisia annua L. Antonie van Leeuwenhoek 100: 521-528. https://doi.org/10.1007/s10482-011-9607-9

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