Diversity and habitat preferences of mangrove species in Demta Bay, Papua Province, Indonesia
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Abstract. Kalor JD, Sumarga E, Choesin DN, Syamsudin TS. 2026. Diversity and habitat preferences of mangrove species in Demta Bay, Papua Province, Indonesia. Biodiversitas 27 (3): d270338. https://doi.org/10.13057/biodiv/d270338. Mangrove species diversity is shaped by complex interactions among environmental factors that influence species-specific habitat preferences. This study aims to assess mangrove species diversity and identify the key environmental factors affecting their habitat preferences in Demta Bay, Jayapura, Papua, Indonesia. Fieldwork was carried out from September 1 to 20, 2024, across 10 research stations covering a total area of 40,000 m². Data were collected using the line transect plot method. At each station, two transects (100 m × 20 m) were established perpendicular to the shoreline, with a spacing of 100 m apart. Along each transect, four plots measuring 10 m × 10 m were established two plots with two replications, resulting in a total of 20 transects and 80 plots. Soil sampling and analysis were performed both in situ and ex situ, with four replications per transect. Data analysis included the Shannon-Wiener, Simpson, Margalef, and Pielou indices, as well as the Important Value Index. Habitat relationships were examined using Principal Component Analysis and Pearson correlation. This study documented 14 mangrove species from 6 families in Demta Bay, indicating moderate diversity. The composition of mangrove vegetation was characterized by an average density of 146.3±14.84 individuals/station (800m2), a diversity index of 1.36±0.25, a dominance index of 0.32±0.07, a species richness of 1.13±0.43, and an evenness index of 0.74±0.10, suggesting stable ecological interactions and functional redundancy among species. Key habitat variables, soil bulk density (0.63±0.21 g cm⁻³), soil pH (6.80±0.32), soil salinity (24.79±2.98 PSU), soil temperature (29.21±1.54°C), and soil moisture (48.70±18.53%), were measured across sites. This study demonstrates that soil characteristics exert a significant influence on mangrove species diversity and endemism in Demta Bay, Jayapura. Elevated salinity was linked to reduced species richness and evenness. Rhizophora apiculata and Rhizophora mucronata were the most dominant and widely distributed species, thriving in saline, compacted soils alongside Bruguiera sexangula. In contrast, Excoecaria agallocha favored moist soils with moderate pH, while Ceriops decandra performed best under slightly alkaline conditions. Given the geomorphological and ecological heterogeneity that drives localized species zonation in Demta Bay, as well as its benefits to local coastal communities, conservation efforts should focus on habitat-specific planting.
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References
Alongi DM. 2018. Impact of global change on nutrient dynamics in mangrove forests. Forests 9 (10): 596. https://doi.org/10.3390/f9100596.
Alongi DM. 2025. Global meta-analysis of mangrove primary production: Implications for carbon cycling in mangrove and other coastal ecosystems. Forests 16 (5): 747. https://doi.org/10.3390/f16050747.
Alongi DM, Zimmer M. 2024. Sustainable development of mangrove ecosystems: A blue carbon perspective. In: Clüsener-Godt M, Matsuda H, Böer B, Loughland RA (eds). Blue Carbon Mangrove Ecosystems. Springer, Cham.
Amir A, Maturbongs RA, Tapilatu RF. 2019. The impacts of coastal community activities on the existence of the Waranggui mangrove forest in South Manokwari, West Papua, Indonesia. Indo Pac J Ocean Life 3 (2): 2. https://doi.org/10.13057/oceanlife/o030202.
Analuddin K, Kadidae LO, Haya LOM, Septiana A, Sahidin I, Syahrir L, Rahim S, Fajar LOA, Nadaoka K. 2020. Aboveground biomass, productivity and carbon sequestration in Rhizophora stylosa mangrove forest of Southeast Sulawesi, Indonesia. Biodiversitas 21 (4): 1316-1325. https://doi.org/10.13057/biodiv/d210407.
Ashraf M, Muhammad F, Hidayat JW, Yaseen M, Ayyaz M, Ahmed W, Anwar MS, Ahmed K. 2023. Comparison of salinity tolerance between Avicennia marina and Rhizophora mucronata Karachi Coast, Pakistan. J Bioresour Environ Sci 2 (3): 89-99. https://doi.org/10.14710/jbes.2023.19306.
Ayu SM, Najib NN, Yumna Y, Witno W, Maria M, Liana L, Sada NH, Pitra P. 2023. Soil physical characteristics of the mangrove ecosystem in Bone Bay, Palopo City. Planta Tropika 11 (2): 105-114. https://doi.org/10.18196/pt.v11i2.16646.
Azwa NMJ, Hanafi MM, Hakim MA, Idris AS, Sahebi M, Rafii MY. 2022. The relationship between soil characteristics and the nutrient status in roots of mangrove (Rhizophora apiculata) trees. Arab J Geosci 15 (12): 1145. https://doi.org/10.1007/s12517-022-10416-8.
Begon M, Townsend CR. 2021. Ecology: From Individuals to Ecosystems. John Wiley & Sons, Inc., Hoboken, New Jersey.
Beyer HL, Haydon DT, Morales JM, Frair JL, Hebblewhite M, Mitchell M, Matthiopoulos J. 2010. The interpretation of habitat preference metrics under use-availability designs. Philos Trans R Soc B Biol Sci 365 (1550): 2245-2254. https://doi.org/10.1098/rstb.2010.0083.
Buffington KJ, Carr JA, MacKenzie RA, Apwong M, Krauss KW, Thorne KM. 2024. Projecting mangrove forest resilience to sea-level rise on a Pacific Island: Species dynamics and ecological thresholds. Estuar Coast 47 (8): 2174-2189. https://doi.org/10.1007/s12237-024-01422-y.
Canty SWJ, Kennedy JP, Fox G, Matterson K, González VL, Núñez-Vallecillo ML, Preziosi RF, Rowntree JK. 2022. Mangrove diversity is more than fringe deep. Sci Rep 12 (1): 1695. https://doi.org/10.1038/s41598-022-05847-y.
Chowdhury R, Sutradhar T, Begam MM, Mukherjee C, Chatterjee K, Basak SK, Ray K. 2019. Effects of nutrient limitation, salinity increase, and associated stressors on mangrove forest cover, structure, and zonation across Indian Sundarbans. Hydrobiologia 842 (1): 191-217. https://doi.org/10.1007/s10750-019-04036-9.
Constance A, Oehri J, Bunbury N, Wiesenberg GLB, Pennekamp F, A’Bear L, Fleischer-Dogley F, Schaepman-Strub G. 2022. Soil nutrient content and water level variation drive mangrove forest aboveground biomass in the lagoonal ecosystem of Aldabra Atoll. Ecol Indic 143: 109292. https://doi.org/10.1016/j.ecolind.2022.109292.
Cooray PL, Chalmers GRL, Chittleborough D. 2024. Mangrove Rehabilitation to Improve Coastal Resilience: Lessons from the Blue Heart Wetlands, Sunshine Coast, Queensland, Australia. Proceedings of the 2nd International Conference on Mangroves for Sustainability. Centre for Environmental Studies and Sustainable Development, Open University of Sri Lanka, Sri Lanka.
Dabalà A, Dahdouh-Guebas F, Dunn DC, Everett JD, Lovelock CE, Hanson JO, Buenafe KCV, Neubert S, Richardson AJ. 2023. Priority areas to protect mangroves and maximise ecosystem services. Nat Commun 14 (1): 5863. https://doi.org/10.1038/s41467-023-41333-3.
Danielson TM, Rivera-Monroy VH, Castañeda-Moya E, Briceño H, Travieso R, Marx BD, Gaiser E, Farfán LM. 2017. Assessment of Everglades mangrove forest resilience: Implications for above-ground net primary productivity and carbon dynamics. For Ecol Manag 404: 115-125. https://doi.org/10.1016/j.foreco.2017.08.009.
Dewiyanti I, Darmawi D, Muchlisin ZA, Helmi TZ, Imelda I, Defira CN. 2021. Physical and chemical characteristics of soil in mangrove ecosystem based on differences habitat in Banda Aceh and Aceh Besar. IOP Conf Ser Earth Environ Sci 674 (1): 012092. https://doi.org/10.1088/1755-1315/674/1/012092.
Dharmawan IWE, Pramudji. 2020. Mangrove community structure in Papuan small islands, case study in Biak Regency. IOP Conf Ser Earth Environ Sci 550 (1): 012002. https://doi.org/10.1088/1755-1315/550/1/012002.
Diana R, Kiswanto K, Hardi EH, Palupi NP, Susmiyati RH, Jaslin J, Matius P, Syahrinudin S, Karyati K. 2023. Soil carbon stock in different of mangrove ecosystem in Mahakam Delta, East Kalimantan, Indonesia. E3S Web Conf 373: 02003. https://doi.org/10.1051/e3sconf/202337302003.
Dodo D, Hidayat S. 2020. The structure, composition, and threatened plants in The Kinarum Protected Forest, South Kalimantan, Indonesia. Biodiversitas 21 (6): 2603-2618. https://doi.org/10.13057/biodiv/d210632.
Duke NC. 2017. Mangrove floristics and biogeography revisited: Further deductions from biodiversity hot spots, ancestral discontinuities, and common evolutionary processes. In: Rivera-Monroy VH, Lee SY, Kristensen E, Twilley RR (eds). Mangrove Ecosystems: A Global Biogeographic Perspective: Structure, Function, and Services. Springer, Cham.
Duke NC, Schmitt K. 2015. Mangroves: Unusual forests at the seas' edge. In: Köhl M, Pancel L (eds). Tropical Forestry Handbook. Springer, Berlin/Heidelberg.
Farahisah H, Siregar PKA. 2024. Estimation of carbon stocks in mangrove sediments in Ruyung Village, Mesjid Raya District, Aceh Besar Regency. BIO Web Conf 87: 02009. https://doi.org/10.1051/bioconf/20248702009.
Friess DA, Krauss KW, Taillardat P, Adame MF, Yando ES, Cameron C, Sasmito SD, Sillanpää M. 2020. Mangrove blue carbon in the face of deforestation, climate change, and restoration. Annu Plant Rev Online 3 (3): 427-456. https://doi.org/10.1002/9781119312994.apr0752.
Gani RA, Barus PA, Sukarman. 2021. Properties and carbon stocks of tropical tidal peat soils deposited on coral limestone in Numfor and Supiori Islands, Papua Province. IOP Conf Ser Earth Environ Sci 648 (1): 012001. https://doi.org/10.1088/1755-1315/648/1/012001.
Giesen W, Wulffraat S, Zieren M, Scholten L. 2007. Mangrove Guidebook for Southeast Asia. FAO Regional Office for Asia and the Pacific and Wetlands International, Bangkok.
Hamuna B, Wanimbo E. 2021. Heavy metal contamination in sediments and its potential ecological risks in Youtefa Bay, Papua Province, Indonesia. J Ecol Eng 22 (8): 209-222. https://doi.org/10.12911/22998993/139116.
Hogarth PJ. 2015. The Biology of Mangroves and Seagrasses. Oxford University Press, United Kingdom.
Hossain M, Nuruddin AA. 2016. Soil and mangrove: A review. J Environ Sci Technol 9 (2): 198-207. https://doi.org/10.3923/jest.2016.198.207.
Hossain M, Saha S, Salekin S, Siddique MRH, Abdullah SMR. 2014. Salinity influence on germination of four important mangrove species of The Sundarbans, Bangladesh. Agric For 60 (2): 125-135.
Indrayani E, Kalor JD, Warpur M, Hamuna B. 2021. Using allometric equations to estimate mangrove biomass and carbon stock in Demta Bay, Papua Province, Indonesia. J Ecol Eng 22 (5): 263-271. https://doi.org/10.12911/22998993/135945.
Jayadi EM, Rahman FA, Ihsan MS, Fitriah L, Agustini D. 2024. Structure and composition of mangrove vegetation in the coastal area of Mandalika International Street Circuit, Central Lombok, Indonesia. Biodiversitas 25 (6): 2719-2728. https://doi.org/10.13057/biodiv/d250642.
Kaliamurthi S, Selvaraj G. 2016. Insight on Excoecaria agallocha: An overview. Nat Prod Chem Res 4 (2): 1000203. https://doi.org/10.4172/2329-6836.1000203.
Kalor JD, Dimara L, Swabra OG, Paiki K. 2018. Status kesehatan dan uji spesies indikator biologi ekosistem mangrove Teluk Yotefa Jayapura. Biosfera 35 (1): 1. https://doi.org/10.20884/1.mib.2018.35.1.495. [Indonesian]
Kalor JD, Indrayani E, Akobiarek MNR. 2019. Fisheries resources of mangrove ecosystem in Demta Gulf, Jayapura, Papua, Indonesia. AACL Bioflux 12 (1): 219-229.
Kasihiw P, Bawole R, Marwa J, Murdjoko A, Wihyawari A, Heipon Y, Cabuy RL, Benu NMH, Hematang F, Leftungun NY. 2024. Mangrove distribution to support biodiversity management in Teluk Bintuni District, West Papua, Indonesia. Biodiversitas 25 (2): 644-653. https://doi.org/10.13057/biodiv/d250223.
Kathiresan K, Bingham BL. 2001. Biology of mangroves and mangrove ecosystems. Adv Mar Biol 40: 81-251. https://doi.org/10.1016/S0065-2881(01)40003-4.
Kauffman JB, Donato DC. 2012. Protocols for the Measurement, Monitoring and Reporting of Structure, Biomass and Carbon Stocks in Mangrove Forests. Center for International Forestry Research (CIFOR), Bogor, Indonesia.
Krebs CJ. 1978. Ecology: The Experimental Analysis of Distribution and Abundance. Harper and Row, New York.
Lekatompessy RL, Maturbongs EE, Betaubun K, Teturan YE, Jeujanan W, Antonio L. 2019. Mitigation approach in preventing environmental destruction continuity in Merauke Regency. IOP Conf Ser Earth Environ Sci 235: 012050. https://doi.org/10.1088/1755-1315/235/1/012050.
Lovelock CE, Cahoon DR, Friess DA, Guntenspergen GR, Krauss KW, Reef R, Rogers K, Saunders ML, Sidik F, Swales A. 2015. The vulnerability of Indo-Pacific mangrove forests to sea-level rise. Nature 526 (7574): 559-563. https://doi.org/10.1038/nature15538.
Lovelock CE, Krauss KW, Osland MJ, Reef R, Ball MC. 2016. The physiology of mangrove trees with changing climate. In: Goldstein G, Santiago LS (eds). Tropical Tree Physiology: Adaptations and Responses in a Changing Environment. Springer, Switzerland.
Madhavan C, Meera SP, Kumar A. 2025. Anatomical adaptations of mangroves to the intertidal environment and their dynamic responses to various stresses. Biol Rev 100 (3): 1019-1046. https://doi.org/10.1111/brv.13172.
Magurran AE. 2003. Measuring Biological Diversity. Blackwell Pub, Malden, USA.
Mueller-Dombois D, Ellenberg H. 1974. Aims and Methods of Vegetation Ecology. John Wiley & Sons, New York.
Nasrin S, Hossain M, Rahman MdM. 2019. Adaptive responses to salinity: Nutrient resorption efficiency of Sonneratia apetala (Buch.-Ham.) along the salinity gradient in the Sundarbans of Bangladesh. Wetl Ecol Manag 27 (2-3): 343-351. https://doi.org/10.1007/s11273-019-09663-6.
Nengi-Benwari AO, Udom BE, Orji OA. 2022. Clay content, bulk density and carbon storage relationships in mangrove and rainforest soils during dry and wet seasons. J Glob Ecol Environ 15: 22-30. https://doi.org/10.56557/jogee/2022/v15i27511.
Noor YR, Khazali M, Suryadiputra INN. 2006. Panduan Pengenalan Mangrove di Indonesia. Ditjen PHKA and Wetlands International-Indonesia Programme, Bogor. [Indonesian]
Ola A, Dodd IC, Albacete A, Xiong Y, Rasmussen A, De Diego N, Lovelock CE. 2024. Mangrove species found in contrasting environments show differing phytohormonal responses to variation in soil bulk density. Plant Soil 500 (1-2): 417-430. https://doi.org/10.1007/s11104-024-06490-4.
Ola A, Schmidt S, Lovelock CE. 2018. The effect of heterogeneous soil bulk density on root growth of field-grown mangrove species. Plant Soil 432 (1-2): 91-105. https://doi.org/10.1007/s11104-018-3784-5.
Rahadian A, Kusmana C, Setiawan Y, Prasetyo LB. 2022. Adaptive mangrove ecosystem rehabilitation plan based on coastal typology and ecological dynamics approach. Hayati 29 (4): 445-458. https://doi.org/10.4308/hjb.29.4.445-458.
Reef R, Feller IC, Lovelock CE. 2010. Nutrition of mangroves. Tree Physiol 30 (9): 1148-1160. https://doi.org/10.1093/treephys/tpq048.
Sannigrahi S, Zhang Q, Pilla F, Joshi PK, Basu B, Keesstra S, Roy PS, Wang Y, Sutton PC, Chakraborti S. 2020. Responses of ecosystem services to natural and anthropogenic forcings: A spatial regression-based assessment in the world’s largest mangrove ecosystem. Sci Total Environ 715: 137004. https://doi.org/10.1016/j.scitotenv.2020.137004.
Sari A, Tuwo A, Rani C, Saru A. 2020. Water quality study and pollution index based on physics-chemical parameters in the Youtefa Bay tourism area, Jayapura. IOP Conf Ser Earth Environ Sci 564 (1): 012030. https://doi.org/10.1088/1755-1315/564/1/012030.
Sari A, Tuwo A, Saru A, Rani C. 2022. Diversity of fauna species in the mangrove ecosystem of Youtefa Bay Tourism Park, Papua, Indonesia. Biodiversitas 23 (9): 4490-4500. https://doi.org/10.13057/biodiv/d230915.
Sartohadi J, Suratman. 2012. Pengantar Geografi Tanah. Pustaka Pelajar, Yogyakarta. [Indonesian]
Sarvina Y. 2023. ENSO and climate variability in Papua. IOP Conf Ser Earth Environ Sci 1192 (1): 012041. https://doi.org/10.1088/1755-1315/1192/1/012041.
Sasmito SD, Kuzyakov Y, Lubis AA, Murdiyarso D, Hutley LB, Bachri S, Friess DA, Martius C, Borchard N. 2020. Organic carbon burial and sources in soils of coastal mudflat and mangrove ecosystems. Catena 187: 104414. https://doi.org/10.1016/j.catena.2019.104414.
Setiawan H, Mursidin. 2018. Ecological characteristic and health of mangrove forest at Tanakeke Island South Sulawesi. Jurnal Penelitian Kehutanan Wallacea 7 (1): 47-58. https://doi.org/10.18330/jwallacea.2018.vol7iss1pp47-58.
Setyadi G, Pribadi R, Wijayanti DP, Sugianto DN. 2021. Mangrove diversity and community structure of Mimika District, Papua, Indonesia. Biodiversitas 22 (8): 3562-3570. https://doi.org/10.13057/biodiv/d220857.
Setyadi G, Wijayanti DP, Pribadi R, Sugianto DN, Ambariyanto, Widowati I, Bawole R. 2022. The status and diversity of mangroves on the South Coast of Papua Island, Indonesia, and a strategy for sustainable mangrove management. Asian J Conserv Biol 11 (2): 132-142.
Sillanpää M, Friess DA, Heatubun CD, Cragg SM, Alei F, Bhargava R, Wahyudi, Hendri, Kalor JD, Purwanto. 2024. Mangrove management practices, policies, and impacts in New Guinea. Biol Conserv 296: 110697. https://doi.org/10.1016/j.biocon.2024.110697.
Sippo JZ, Lovelock CE, Santos IR, Sanders CJ, Maher DT. 2018. Mangrove mortality in a changing climate: An overview. Estuar Coast Shelf Sci 215: 241-249. https://doi.org/10.1016/j.ecss.2018.10.011.
Spellerberg IF, Fedor PJ. 2003. A tribute to Claude Shannon (1916-2001) and a plea for more rigorous use of species richness, species diversity and the ‘Shannon-Wiener’ Index. Glob Ecol Biogeogr 12 (3): 177-179. https://doi.org/10.1046/j.1466-822X.2003.00015.x.
Sreelekshmi S, Nandan SB, Kaimal SV, Radhakrishnan CK, Suresh VR. 2020. Mangrove species diversity, stand structure and zonation pattern in relation to environmental factors: A case study at Sundarban delta, east coast of India. Reg Stud Mar Sci 35: 101111. https://doi.org/10.1016/j.rsma.2020.101111.
Strain EMA, Kompas T, Boxshall A, Kelvin J, Swearer S, Morris RL. 2022. Assessing the coastal protection services of natural mangrove forests and artificial rock revetments. Ecosyst Serv 55: 101429. https://doi.org/10.1016/j.ecoser.2022.101429.
Sumani, Supriyadi, Masiyah S, Aryani W. 2021. The evaluate soil quality of mangrove forest in Merauke, Papua. IOP Conf Ser Earth Environ Sci 724 (1): 012019. https://doi.org/10.1088/1755-1315/724/1/012019.
Tan KH. 2005. Soil Sampling, Preparation, and Analysis. Taylor & Francis, New York.
Tomlinson PB. 2016. The Botany of Mangroves. Cambridge University Press, Cambridge.
Wang W, Xin K, Chen Y, Chen Y, Jiang Z, Sheng N, Liao B, Xiong Y. 2024. Spatio-temporal variation of water salinity in mangroves revealed by continuous monitoring and its relationship to floristic diversity. Plant Divers 46 (1): 134-143. https://doi.org/10.1016/j.pld.2023.06.006.
Weiss C, Weiss J, Boy J, Iskandar I, Mikutta R, Guggenberger G. 2016. Soil organic carbon stocks in estuarine and marine mangrove ecosystems are driven by nutrient colimitation of P and N. Ecol Evol 6 (14): 5043-5056. https://doi.org/10.1002/ece3.2258.
Wiesebron LE, Steiner N, Morys C, Ysebaert T, Bouma TJ. 2021. Sediment bulk density effects on benthic macrofauna burrowing and bioturbation behavior. Front Mar Sci 8: 707785. https://doi.org/10.3389/fmars.2021.707785.
Wu H, Xue Y, Liu W. 2025. Evaluating the potential of Cuscuta japonica as biological control agent for Derris trifoliata management in mangrove forests. Forests 16 (8): 1250. https://doi.org/10.3390/f16081250.
Yan R, Feng J, Fu T, Chen Q, Wang Z, Kang F, Fang J, Huang G, Yang Q. 2024. Spatial variation of organic carbon storage and aggregate sizes in the sediment of the Zhangjiang mangrove ecosystem. Catena (Amst) 234: 107545. https://doi.org/10.1016/j.catena.2023.107545.
Yudha RP, Sugito YS, Sillanpää M, Nurvianto S. 2021. Impact of logging on the biodiversity and composition of flora and fauna in the mangrove forests of Bintuni Bay, West Papua, Indonesia. For Ecol Manag 488: 119038. https://doi.org/10.1016/j.foreco.2021.119038.