Antimicrobial activity of nudibranch Chromodoris lineolata associated bacteria against skin diseases pathogens from Jepara Coastal Waters, Indonesia
##plugins.themes.bootstrap3.article.sidebar##
Issue
Section
Articles
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
##plugins.themes.bootstrap3.article.main##
Abstract
Abstract. Wijaya AP, Sabdono A, Sibero MT, Trianto A, Radjasa OK. 2022. Antimicrobial activity of nudibranch Chromodoris lineolata associated bacteria against skin diseases pathogens from Jepara Coastal Waters, Indonesia. Biodiversitas 23: 1911-1919. The emergence of multidrug-resistant (MDR) skin pathogens has caused the treatment of skin diseases to become increasingly ineffective using by conventional antibiotics. As a source of antimicrobial compounds against MDR pathogens, marine invertebrate-associated bacteria have been widely known for their valuable biological activity. Therefore, this study aims to determine the antimicrobial activity of nudibranch Chromodoris lineolata associated bacteria against various skin pathogens and to detect the presence of biosynthetic gene clusters (BGC) through a molecular approach. A total of 14 nudibranch-associated bacteria were successfully isolated from Awur Bay and Panjang Island. Antimicrobial activity screening using the agar plug method indicated that three bacterial strains showed antimicrobial activity against two skin pathogens, Propionibacterium acnes and Malassezia furfur. Based on the biochemical test, these potential strains were classified into the Terrabacteria and Proteobacteria groups. Through 16S rRNA gene sequencing, potential strains were identified as Streptomyces lateritius, Labrenzia marina, and Halomonas meridiana through 16S rRNA gene sequencing. The results of BGC detection showed the presence of a type II polyketide synthase (PKS II) biosynthetic gene cluster in Streptomyces lateritius and Labrenzia marina strains at 600bp-650bp.
##plugins.themes.bootstrap3.article.details##
References
Al-Ansari M, Kalaiyarasi M, Almalki M A, Vijayaraghavan P. 2020. Optimization of medium components for the production of antimicrobial and anticancer secondary metabolites from Streptomyces sp. AS11 isolated from the marine environment. Journal of King Saud University - Science 32 (3) : 1993–1998. DOI: 10.1016/j.jksus.2020.02.005.
Almas M, Tahir U, Zameer M, Shafiq MI, Farrukh SY, Zahra N, Mazhar M, Gill SA, Hadi F, Muhammad T, Ali Q, Malik A. 2021. Detection of INVA Gene and Cytotoxin of Salmonella entertidis in Food Samples Using Molecular Methods. Journal of Pharmaceutical Research International 33 (12) : 20–28. DOI: 10.9734/JPRI/2021/v33i1231249.
Aoki S, Nakase K, Nakaminami H, Wajima T, Hayashi N, Noguchi N. 2020. Transferable Multidrug-Resistance Plasmid Carrying a Novel Macrolide-Clindamycin Resistance Gene, erm(50), in Cutibacterium acnes. Antimicrobial Agents and Chemotherapy 64 (3) : e01810-19. DOI: 10.1128/acc.01810-19.
Ariño J, Ramos J, Sychrová H. 2010. Alkali Metal Cation Transport and Homeostasis in Yeasts. Microbiology and Molecular Biology Reviews 74 (1) : 95–120. DOI: 10.1128/mmbr.00042-09.
Ayitso AS, Onyango DM. 2016. Isolation and Identification by Morphological and Biochemical Methods of Antibiotic Producing Microorganisms from the gut of Macrotermes michaelseni in Maseno, Kenya. J. Appl. Biol. Biotechnol 4 : 27–33. DOI: 10.7324/JABB.2016.40105.
Ayuningrum D, Liu Y, Riyanti Sibero MT, Kristiana R, Asagabaland MA, Wuisan ZG, Trianto A, Radjasa OK, Sabdono A, Schäberle TF. 2019. Tunicate-associated bacteria show a great potential for the discovery of antimicrobial compounds. PLoS ONE 14 (3) : 1–14. DOI: 10.1371/journal.pone.0213797.
Basak S, Singh P, Rajurkar M. 2016. Multidrug Resistant and Extensively Drug Resistant Bacteria: A Study. Journal of Pathogens 2016 1–5. DOI: 10.1155/2016/4065603.
Belknap KC, Park CJ, Barth BM, Andam CP. 2020. Genome mining of biosynthetic and chemotherapeutic gene clusters in Streptomyces bacteria. Scientific Reports 10 (1) : 1–9. DOI: 10.1038/s41598-020-58904-9.
Bibi F, Jeong JH, Chung EJ, Jeon CO, Chung YR. 2014. Labrenzia suaedae sp. nov., a marine bacterium isolated from a halophyte, and emended description of the genus Labrenzia. International Journal of Systematic and Evolutionary Microbiology 64 (4) : 1116–1122. DOI: 10.1099/ijs.0.052860-0.
Bienenfeld A, Nagler AR, Orlow SJ. 2017. Oral Antibacterial Therapy for Acne Vulgaris: An Evidence-Based Review. American Journal of Clinical Dermatology 18 (4) : 469–490. DOI: 10.1007/s40257-017-0267-z.
Böhringer N, Fisch KM, Schillo D, Bara R, Hertzer C, Grein F, Eisenbarth JH, Kaligis F, Schneider T, Wägele H, König GM, Schäberle TF. 2017. Antimicrobial potential of bacteria associated with marine sea slugs from North Sulawesi, Indonesia. Frontiers in Microbiology 8 1–8. DOI: 10.3389/fmicb.2017.01092.
Chang HH, Cohen T, Grad YH, Hanage WP, O’Brien TF, Lipsitch M. 2015. Origin and Proliferation of Multiple-Drug Resistance in Bacterial Pathogens. Microbiology and Molecular Biology Reviews 79 (1) : 101–116. DOI: 10.1128/MMBR.00039-14.
Chen R, Wong H, Burns B. 2019. New Approaches to Detect Biosynthetic Gene Clusters in the Environment. Medicines 6 (1) : 32. DOI: 10.3390/medicines6010032.
Cheney KL, White A, Mudianta IW, Winters AE, Quezada M, Capon RJ, Mollo E, Garson MJ. 2016. Choose your weaponry: Selective storage of a single toxic compound, latrunculin a, by closely related nudibranch molluscs. PLoS ONE 11 (1) : 1–16. DOI: 10.1371/journal.pone.0145134.
Ding D, Chen G, Wang B, Wang Q, Liu D, Peng M, Shi P. 2013. Culturable actinomycetes from desert ecosystem in northeast of Qinghai-Tibet Plateau. Annals of Microbiology 63 (1) : 259–266. DOI: 10.1007/s13213-012-0469-9.
Fang BZ, Salam N, Han MX, Jiao JY, Cheng J, Wei DQ, Xiao M and Li WJ. 2017. Insights on the effects of heat pretreatment, pH, and calcium salts on isolation of rare Actinobacteria from Karstic Caves. Frontiers in Microbiology 8 1–9. DOI: 10.3389/fmicb.2017.01535.
Frederick EH, Sibero MT, Wijaya AP, Syafitri E, Siswanto AP, Murwani R, Wijayanti DP, Sabdono A, Pringgenies D, Radjasa OK. 2021. Preliminary Evaluation of Anti Fish Pathogenic Bacteria and Metabolite Profile of Andaliman Fruit (Zanthoxylum acanthopodium DC .) Ethanol Extract Preliminary Evaluation of Anti Fish Pathogenic Bact. IOP Conference Series: Earth and Environmental Science 750 (1) : 012026. DOI: 10.1088/1755-1315/750/1/012026.
Hanif N, Murni A, Tanaka C, Tanaka J. 2019. Marine natural products from Indonesian waters. Marine Drugs 17 (6). DOI: 10.3390/md17060364.
Hay RJ, Johns NE, Williams HC, Bolliger IW, Dellavalle RP, Margolis DJ, Marks R, Naldi L, Weinstock MA, Wulf SK, Michaud C, J.l. Murray C, Naghavi M. 2014. The global burden of skin disease in 2010: An analysis of the prevalence and impact of skin conditions. Journal of Investigative Dermatology 134 (6) : 1527–1534. DOI: 10.1038/jid.2013.446.
Hodges TW, Slattery M, Olson JB. 2012. Unique Actinomycetes from Marine Caves and Coral Reef Sediments Provide Novel PKS and NRPS Biosynthetic Gene Clusters. Marine Biotechnology 14 (3) : 270–280. DOI: 10.1007/s10126-011-9410-7.
Hohmann S. 2002. Osmotic Stress Signaling and Osmoadaptation in Yeasts. Microbiology and Molecular Biology Reviews 66 (2) : 300–372. DOI: 10.1128/MMBR.66.2.300-372.2002.
Jacopin E, Lehtinen S, Débarre F, Blanquart F. 2020. Factors favouring the evolution of multidrug resistance in bacteria: Factors favouring the evolution of multidrug resistance in bacteria. Journal of the Royal Society Interface 17 (168). DOI: 10.1098/rsif.2020.0105.
Kabir MA, Hussain MA, Ahmad Z. 2012. Candida albicans?: A Model Organism for Studying Fungal Pathogens. ISRN Microbiology 2012 1–15. DOI: 10.5402/2012/53869410.5402/2012/538694.
Karimkhani C, Dellavalle RP, Coffeng LE, Flohr C, Hay RJ, Langan SM, Nsoesie EO, Ferrari AJ, Erskine HE, Silverberg JI, Vos T, Naghavi M. 2017. Global skin disease morbidity and mortality an update from the global burden of disease study 2013. JAMA Dermatology 153 (5) : 406–412. DOI: 10.1001/jamadermatol.2016.5538.
Krediet CJ, Ritchie KB, Teplitski M. 2009. Catabolite regulation of enzymatic activities in a white pox pathogen and commensal bacteria during growth on mucus polymers from the coral Acropora palmata. Diseases of Aquatic Organisms 87 (1–2) 57–66. DOI: 10.3354/dao02084.
Kristiana R, Sibero MT, Farisa MY, Ayuningrum D, Dirgantara D, Hanafi M, Radjasa OK, Sabdono A, Trianto A. 2019. Antibacterial potential of nudibranch-associated bacteria from Saparua and Nusa Laut Islands, Indonesia. Biodiversitas 20 (7) : 1811–1819. DOI: 10.13057/biodiv/d200704.
Ksiezopolska E, Gabaldón T. 2018. Evolutionary emergence of drug resistance in candida opportunistic pathogens. Genes 9 (9). DOI: 10.3390/genes9090461.
Kühbacher A, Burger-Kentischer A, Rupp S. 2017. Interaction of Candida Species with the Skin. Microorganisms 5 (4) 32. DOI: 10.3390/microorganisms5020032.
Lee JYH, Monk IR, Gonçalves da Silva A, Seemann T, Chua KYL, Kearns A, Hill R, Woodford N, Bartels MD, Strommenger B, Laurent F, Dodémont M, Deplano A, Patel R, Larsen A R, Korman TM, Stinear TP, Howden BP. 2018. Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis. Nature Microbiology 3 (10) : 1175–1185. DOI: 10.1038/s41564-018-0230-7.
Li X, Yu C, Huang X, Sun S. 2016. Synergistic effects and mechanisms of budesonide in combination with fluconazole against resistant Candida albicans. PLoS ONE 11 (12) : 1–20. DOI: 10.1371/journal.pone.0168936.
Margarida A, Olívia M, Lourenço A. 2015. MorphoCol?: An ontology-based knowledgebase for the characterisation of clinically significant bacterial colony morphologies. Journal Of Biomedical Informatics 55 : 55–63. DOI: 10.1016/j.jbi.2015.03.007.
Martinet L, Naômé A, Deflandre B, Maciejewska M, Tellatin D, Tenconi E, Smargiasso N, De Pauw E, Van Wezel GP, Rigali S. 2019. A single biosynthetic gene cluster is responsible for the production of bagremycin antibiotics and ferroverdin iron chelators. MBio 10 (4) : 1–15. DOI: 10.1128/mBio.01230-19.
Mostafa YS, Alamri SA, Alfaifi MY, Alrumman SA, Elbehairi SE I, Taha TH, Hashem M. 2021. L-Glutaminase Synthesis by Marine Halomonas meridiana Isolated from the Red Sea and Its Efficiency against Colorectal Cancer Cell Lines. Molecules Basel, Switzerland 26 (7) : 1963. DOI: 10.3390/molecules26071963.
Nagano Y, Nagahama T, Hatada Y, Nunoura T, Takami H, Miyazaki J, Takai K, Horikoshi K. 2010. Fungal diversity in deep-sea sediments - the presence of novel fungal groups. Fungal Ecology 3 (4) : 316–325. DOI: 10.1016/j.funeco.2010.01.002.
Ompi M, Lumoindong F, Undap N, Papu A, Wägele H. 2019. Monitoring marine heterobranchia in lembeh strait, north sulawesi (Indonesia), in a changing environment. AACL Bioflux 12 (2) : 664–677.
Park SH, Kim JY, Heo MS. 2019. Labrenzia callyspongiae sp. Nov., Isolated from Marine Sponge Callyspongia elegans in Jeju Island. Journal of Microbiology and Biotechnology 29 (12) : 1969–1974. DOI: 10.4014/jmb.1812.12004.
Radjasa OK. 2007. Identification of Sponge-Associated Bacteria with Antibacterial Property against Staphylococcus aureus based on Molecular Approach. Majalah Ilmiah Biologi BIOSFERA: A Scientific Journal 24 (3) : 98-104. DOI: 10.20884/1.mib.2007.24.3.282.
Reddy KV, Mohanraju R, Murthy KN, Ramesh C, Karthick P, Islands N. 2015. Antimicrobial properties of nudibranchs tissues extracts from South Andaman, India. Journal of Coastal Life Medicine 3 (7) : 582–584. DOI: 10.12980/JCLM.3.201514J65.
Ren Q, Liao G, Wu Z, Lv J, Chen W. 2020. Prevalence and characterization of Staphylococcus aureus isolates from subclinical bovine mastitis in southern Xinjiang, China. Journal of Dairy Science 103 (4) : 3368–3380. DOI: 10.3168/jds.2019-17420.
Reynolds KA, Luhavaya H, Li J, Dahesh S, Nizet V, Yamanaka K, Moore BS. 2018. Isolation and structure elucidation of lipopeptide antibiotic taromycin B from the activated taromycin biosynthetic gene cluster. Journal of Antibiotics 71 (2) : 333–338. DOI: 10.1038/ja.2017.146.
Sabdono A, Radjasa OK. Trianto A, Sibero MT, Martynov A, Kristiana R. 2021. an Ecological Assessment of Nudibranch Diversity Among Habitats Receiving Different Degrees of Sedimentation in Jepara Coastal Waters, Indonesia. International Journal of Conservation Science 12 (1) : 291–302.
Sharma A, Sharma SC. 2017. Physiological Basis for the Tolerance of Yeast Zygosaccharomyces bisporus to Salt Stress. HAYATI Journal of Biosciences 24 (4) : 176–181. DOI: 10.1016/j.hjb.2017.11.001.
Sibero MT, Herdikiawan D, Radjasa O K, Sabdono A, Trianto A, Triningsih DW. 2018. Antibacterial activity of sponge associated fungi against vibriosis agents in shrimp and its toxicity to Litopenaeus vannamei. AACL Bioflux 11 (1) : 10–18.
Sibero MT, Igarashi Y, Radjasa OK, Sabdono A, Trianto A, Zilda DS, Wijaya Y J. 2019. Sponge-associated fungi from a mangrove habitat in Indonesia?: species composition , antimicrobial activity , enzyme screening and bioactive profiling Sponge-associated fungi from a mangrove habitat in Indonesia?: species composition , antimicrobial activ. International Aquatic Research 11 (2) : 173–186. DOI: 10.1007/s40071-019-0227-8.
Sibero MT, Radjasa OK, Sabdono A, Trianto A, Triningsih DW and Hutagaol ID. 2018. Antibacterial activity of indonesian sponge associated fungi against clinical pathogenic multidrug resistant bacteria. Journal of Applied Pharmaceutical Science 8 (2) : 088–094. DOI: 10.7324/JAPS.2018.8214.
Takahashi Y, Takahashi H, Galipon J, Arakawa K. 2020. Complete Genome Sequence of Halomonas meridiana Strain Slthf1, Isolated from a Deep-Sea Thermal Vent. Microbiology Resource Announcements 9 (16) : e00292-20. DOI: 10.1128/MRA.00292-20.
Talaiekhozani A, Alaee S, Mohanadoss P, Knowledge I. 2015. Guidelines for quick application of biochemical tests to identify unknown bacteria. Accounts of Biotechnology Research 2 (2) : 64–82.
Trianto A, De Voodg NJ, Tanaka J. 2014. Two new compounds from an Indonesian sponge Dysidea sp.. Journal of Asian Natural Products Research 16 (20) : 163–168. DOI: 10.1080/10286020.2013.844128.
Usman HM, Abdulkadir N, Gani M, Maiturare HM. 2017. Bacterial pigments and its significance. MOJ Bioequiv Availab 4 (3) : 00073. DOI: 10.15406/mojbb.2017.04.00073.
Wang TZ, Kodiyanplakkal RPL, Calfee DP. 2019. Antimicrobial resistance in nephrology. Nature Reviews Nephrology 15 (8) : 463-481. DOI: 10.1038/s41581-019-0150-7.
Wijaya AP, Bondar K G, Frederick EH, Igarashi Y, Sibero MT. 2020. Identification of marine bacteria HPP. 4A and HPP. T13 and its anticancer activity against P388 murine leukaemia cell. IOP Conference Series: Earth and Environmental Science 584 (1) : 012005. DOI: 10.1088/1755-1315/584/1/012005.
Wijaya AP, Sibero MT, Zilda DS, Windiyana AN, Wijayanto A, Frederick EH, Murwani R, Wijayanti DP, Sabdono A, Pringgenies D, Radjasa OK. 2021. Preliminary Screening of Carbohydrase-Producing Bacteria from Preliminary Screening of Carbohydrase-Producing Bacteria from Chaetomorpha sp . in Sepanjang Beach, Yogyakarta, Indonesia.. IOP Conference Series: Earth and Environmental Science 750 (1) : p. 012027. DOI: 10.1088/1755-1315/750/1/012027.
Wijayanti DP, Sabdono A, Dirgantara D, Widyananto PA, Sibero MT, Bhagooli R, Hidaka M. 2020. Antibacterial activity of acroporid bacterial symbionts against White Patch Disease in Karimunjawa Archipelago, Indonesia. Egyptian Journal of Aquatic Research 46 (2) : 187–193. DOI: 10.1016/j.ejar.2020.02.002.
Winters AE, White AM, Dewi AS, Mudianta IW, Wilson NG, Forster LC, Garson MJ, Cheney KL. 2018. Distribution of Defensive Metabolites in Nudibranch Molluscs. Journal of Chemical Ecology 44 (4) : 384–396. DOI: 10.1007/s10886-018-0941-5.
Yang J, Yang H, Xu A, He L. 2020. A Review of Advancement on Influencing Factors of Acne: An Emphasis on Environment Characteristics. Frontiers in Public Health 1–16. DOI: 10.3389/fpubh.2020.00450.
Most read articles by the same author(s)
- RETNO MURWANI, MADA TRIANDALA SIBERO, POLA RISDA ASWITA SILITONGA, AMBARIYANTO AMBARIYANTO , Bioprospecting of cow's ruminal microbiota from a slaughterhouse in Ambarawa, Central Java, Indonesia , Biodiversitas Journal of Biological Diversity: Vol. 22 No. 11 (2021)
- MEEZAN ARDHANU ASAGABALDAN, GILLES BEDOUX, NATHALIE BOURGOUGNON, RHESI KRISTIANA, DIAH AYUNINGRUM, AGUS SABDONO, AGUS TRIANTO, OCKY KARNA RADJASA, Bacterial isolates from bryozoan Pleurocodonellina sp.: Diversity and antimicrobial potential against pathogenic bacteria , Biodiversitas Journal of Biological Diversity: Vol. 20 No. 9 (2019)
- FAQIH AKBAR ALGHOZALI, DIAH PERMATA WIJAYANTI, AGUS SABDONO, Short Communication: Genetic diversity of scalloped hammerhead sharks (Sphyrna lewini) landed in Muncar Fishing Port, Banyuwangi , Biodiversitas Journal of Biological Diversity: Vol. 20 No. 4 (2019)
- ELIS INDRAYANTI, MUHAMMAD ZAINURI, AGUS SABDONO, DIAH PERMATA WIJAYANTI, WIDODO SETIYO PRANOWO, HENDRY SYAHPUTRA ROPINUS SIAGIAN, Larval dispersal model of coral Acropora in the Karimunjawa Waters, Indonesia , Biodiversitas Journal of Biological Diversity: Vol. 20 No. 7 (2019)
- DIAH PERMATA WIJAYANTI, AGUS SABDONO, PRASTYO ABI WIDYANANTO, DIO DIRGANTARA, MICHIO HIDAKA, Bacterial symbionts of acroporid corals: Antipathogenic potency against Black Band Disease , Biodiversitas Journal of Biological Diversity: Vol. 19 No. 4 (2018)
- IRWANI, DIAH PERMATA WIJAYANTI, ANINDIA WIRA SATRIA, AGUS SABDONO, Phylogeographic and molecular characterization of Pronghorn spiny lobster (Panulirus penicillatus Olivier, 1791) in the Southern Coast of Java and Lombok, Indonesia , Biodiversitas Journal of Biological Diversity: Vol. 21 No. 12 (2020)
- ARISTI DIAN PURNAMA FITRI, HERRY BOESONO, FAIK KUROHMAN, BOGI BUDI JAYANTO, DESCA ESTIYANI DEWI, AGUS SABDONO, Short Communication: Behavioral study on Anguilla bicolor using a modified trap design at laboratory scale , Biodiversitas Journal of Biological Diversity: Vol. 20 No. 8 (2019)
- AGUS SABDONO, AGUS TRIANTO, OCKY KARNA RADJASA, DIAH PERMATA WIJAYANTI, Short Communication: Antagonistic activity of bacteria isolated from coral Acropora sp of Karimunjawa Islands, Indonesia against Acroporid White Syndrome , Biodiversitas Journal of Biological Diversity: Vol. 20 No. 5 (2019)
- BASKORO ROCHADDI, MUHAMMAD ZAINURI, AGUS SABDONO, Short Communication: Diversity of Chlorpyrifos-degrading bacteria isolated from shallow aquifer of East Java Coastal Settlements, Indonesia , Biodiversitas Journal of Biological Diversity: Vol. 20 No. 12 (2019)
- ERIDHANI DHARMA SATYA, AGUS SABDONO, DIAH PERMATA WIJAYANTI, MUHAMMAD HELMI, RIKHA WIDIARATIH, AGUS ANUGROHO DWI SURYOPUTRA, GENTUR HANDOYO, ARDIANSYAH DESMONT PURYAJATI, Mapping coral cover using Sentinel-2A in Karimunjawa, Indonesia , Biodiversitas Journal of Biological Diversity: Vol. 24 No. 2 (2023)