Phenotype variability of Pometia pinnata from Riau, Indonesia based on qualitative characters

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ZULFAHMI
http://orcid.org/0000-0001-6146-9919
ROSMAINA

Abstract

Abstract. Zulfahmi, Rosmaina. 2024. Phenotype variability of Pometia pinnata from Riau, Indonesia based on qualitative characters. Biodiversitas 25: 3953-3964. Matoa (Pometia pinnata J.R.Forst. & G.Forst.) is an important underutilized fruit tree in Riau Province, Indonesia. Information on the genetic diversity of P. pinnata is poorly reported. This study aimed to estimate the phenotype variability of P. pinnata in Riau Province, Indonesia based on qualitative characters. Twenty-seven qualitative characters were used to study the phenotype variability of 24 P. pinnata genotypes. The diversity for each character was calculated using the Shannon-Weaver Index and cluster analysis among genotypes was constructed by an Unweighted Pair Group Method with Arithmetic Average (UPGMA). The results showed a high variability in almost all the characters observed. The estimated value of the Shannon-Weaver Index of P. pinnata ranged from 0.00-0.980. Eighteen characters exhibited a high diversity level (0.67-0.98), two characters demonstrated an intermediate level (0.41-0.66), and the remaining had low diversity (0.00-0.25). A dendrogram grouped 24 P. pinnata into four main clusters, i.e. black-skinned P. pinnata and green-skinned P. pinnata, yellow-skinned P. pinnata, red-skinned P. pinnata, and red-skinned P. pinnata. In general, P. pinnata was grouped based on the color of the ripe fruit skin, which indicated that fruit color characters play an important role in P. pinnata diversity. The ripe skin color can be used as the specific character to differentiate among P. pinnata genotypes easily. This information can be utilized for P. pinnata improvement and breeding in the future.

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References
Adrian, Syahputra RA, Lie S, Theo S, Nugraha SE. 2021. Antioxidant, total phenol, total flavonoid, and LC-MS/MS analysis of Pometia pinnata ethanol extract. IEEE International Conference on Health, Instrumentation & Measurement, and Natural Sciences (InHeNce). 14-16 July 2021. DOI: 10.1109/InHeNce52833.2021.9537214.
Alencar GM, de Castilho CV, Costa FRC. 2023. When are buttresses and stilt roots necessary for a tree in terra-firme Amazonian forests? Biotropica 55 (3): 665-673. DOI : 10.1111/btp.13217.
Arumugam AV, Ramaiya SD, Saupi N. 2021. Genetic diversity of crystal longan fruit (Pometia pinnata J.R.Forst & G.Forst) in Bintulu. 1st Postgraduate Seminar on Agriculture and Forestry 2021. Universiti Putra Malaysia Bintulu, Sarawak, 6 October 2021.
Benlloch R, Berbel A, Ali L, Gohari G, Millán T, Madueño F. 2015. Genetic control of inflorescence architecture in legumes. Front Plant Sci 6: 543. DOI: 10.3389/fpls.2015.00543.
Calimpang IA, Gentallan Jr. RP, Borromeo TH. 2024. Morphological characterization and geographical mapping of mango (Mangifera indica L.) accessions. Intl J Agric Technol 20 (3): 957-966.
Cao J, Chen L, Wang J, Xing J, Lv X, Maimaitijiang T, Lan H. 2020. Effects of genetic and environmental factors on variations of seed heteromorphism in Suaeda aralocaspica. AoB Plants 12 (5): plaa044. DOI: 10.1093/aobpla/plaa044.
Cervantes E, Martín JJ, Saadaou E. 2016. Updated methods for seed shape analysis. Scienti?ca 2016: 5691825. DOI: 10.1155/2016/5691825.
Chen M-S, Zhao M-L, Wang G-J, He H-Y, Bai X, Pan B-Z, Fu Q-T, Tao Y-B, Tang M-Y, Martínez-Herrera J, Xu Z-F. 2019. Transcriptome analysis of two inflorescence branching mutants reveals cytokinin is an important regulator in controlling inflorescence architecture in the woody plant Jatropha curcas. BMC Plant Biol 19 (1): 468. DOI: 10.1186/s12870-019-2069-3.
Chen Y, Huang Z, Tang L. 2021. Invisible red in young leaves: Anthocyanin likely plays a defensive role in some other way beyond visual warning. Flora 280: 151833. DOI: 10.1016/j.flora.2021.151833.
Chesnokov YV, Kosolapov VM, Savchenko IV. 2020. Morphological genetic markers in plants. Russ J Genet 56 (12): 1406-1415. DOI: 10.1134/S1022795420120042.
Fatimah I, Purwiandono G, Hidayat H, Sagadevan S, Ghazali SAISM, Oh W-C, Doong R-A. 2021. Flower-like SnO2 nanoparticle biofabrication using Pometia pinnata leaf extract and study on its photocatalytic and antibacterial activities. Nanomaterials 11 (11): 3012. DOI: 10.3390/nano11113012.
Feng X, Yang X, Zhong M, Li X, Zhu P. 2022. BoALG10, an ?-1,2 glycosyltransferase, play an essentials role in maintaining leaf margin shape in ornamental kale. Hortic Res 9: uhac137. DOI: 10.1093/hr/uhac137.
Fournier T, Saada OA, Hou J, Peter J, Caudal E, Schacherer J. 2019. Extensive impact of low-frequency variants on the phenotypic landscape at population-scale. eLife 8: e49258. DOI: 10.7554/eLife.49258.
Gong W-C, Liu Y-H, Wang C-M, Chen Y-Q, Martin K, Meng L-Z. 2020. Why are there so many plant species that transiently flush young leaves red in the tropics? Front Plant Sci 11: 83. DOI: 10.3389/fpls.2020.00083.
Hughes J, Khazaei H, Vandenberg A. 2020. The study of genetics of flower color in faba bean reveals generous diversity to be used in the horticulture industry. HortScience 55 (10): 1584-1588. DOI: 10.21273/hortsci15238-20.
Hughes NM, Lev-Yadun S. 2015. Red/purple leaf margin coloration: Potential ecological and physiological functions. Environ Exp Bot 119: 27-39. DOI: 10.1016/j.envexpbot.2015.05.015.
IPGRI. 2003. Descriptors for Rambutan (Nephelium lappaceum). International Plant Genetic Resources Institute, Rome.
Itle RA, Kabelka EA, Olmstead JW. 2022. Heritability estimates of L*a*b color space values in winter squash (Cucurbita spp.). HortScience 57 (2): 202-214. DOI: 10.21273/hortsci15961-21.
Jena RC, Agarwal K, Chand PK. 2021. Fruit and leaf diversity of selected Indian mangoes (Mangifera indica L.). Sci Hortic 282: 109941. DOI: 10.1016/j.scienta.2021.109941.
Kaiser C-F, Perilli A, Grossmann G, Meroz Y. 2023. Studying root-environment interactions in structured microdevices. J Exp Bot 74 (13): 3851-3863. DOI: 10.1093/jxb/erad122.
Karagiannis E, Michailidis M, Tanou G, Scossa F, Sarrou E, Stamatakis G, Samiotaki M, Martens S, Fernie AR, Molassiotis A. 2020. Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening. Hortic Res 7: 120. DOI: 10.1038/s41438-020-00340-x.
Kayesh E, Shangguan L, Korir NK, Sun X, Bilkish N, Zhang Y, Han J, Song C, Cheng Z-M, Fang J. 2013. Fruit skin color and the role of anthocyanin. Acta Physiol Plant 35: 2879-2890. DOI: 10.1007/s11738-013-1332-8.
Keerthi CM, Ramesh S, Byregowda M, Rao AM, Rajendra Prasad BS, Vaijayanthi PV. 2014. Genetics of growth habit and photoperiodic response to flowering time in dolichos bean (Lablab purpureus (L.) Sweet). J Genet 93 (1): 203-206. DOI: 10.1007/s12041-014-0336-5.
Kellogg EA. 2022. Genetic control of branching patterns in grass inflorescences. Plant Cell 34 (7): 2518-2533. DOI: 10.1093/plcell/koac080.
Khalid M, Khan F, Naz L, Durr-e-Nayab, Fayyaz H, Samad A, Gul F, Khan RN. 2016. Assessment of variability in sugarcane genotypes based on morphological traits. Am Eurasian J Agric Environ Sci 16 (6): 1043-1050. DOI: 10.5829/idosi.aejaes.2016.16.6.12964.
Kolivand H, Fern BM, Rahim MSM, Sulong G, Baker T, Tully D. 2018. An expert botanical feature extraction technique based on phenetic features for identifying plant species. PLoS One 13 (2): e0191447. DOI: 10.1371/journal.pone.0191447.
Kostyn K, Boba A, Kozak B, Sztafrowski D, Widu?a J, Szopa J, Preisner M. 2023. Transcriptome profiling of flax plants exposed to a low-frequency alternating electromagnetic field. Front Genet 14: 1205469. DOI: 10.3389/fgene.2023.1205469.
Kumar A, Gupta AK, Kanth N, Marboh ES, Yadav SK. 2024. Assessment of variability and genetic divergence of longan genotypes (Dimocarpus longan Lour.) based on qualitative and quantitative traits. Euphytica 220: 72. DOI: 10.1007/s10681-024-03314-5.
Kumar NLA, Pandey SD. 2023. Effects of tree trunk, branch and leaf traits on morphological diversity of Litchi chinensis Sonn. Bangladesh J Bot 52 (1): 197-202. DOI: 10.3329/bjb.v52i1.65251.
Lal N, Pandey SK, Pandey SD, Nath V. 2023. Genetic diversity and grouping of Litchi genotypes based on 83 qualitative and quantitative traits. Erwerbs-Obstbau 65: 1003-1012. DOI: 10.1007/s10341-022-00747-x.
Li F, Song X, Wu L, Chen H, Liang Y, Zhang Y. 2018. Heredities on fruit color and pigment content between green and purple fruits in tomato. Sci Hortic 235: 391-396. DOI: 10.1016/j.scienta.2018.03.030.
Li S, Wang M, Yu H. 2022. Modeling and analysis of root branching plasticity based on parrondo's game. J Hortic Res 30 (2): 23-32. DOI: 10.2478/johr-2022-0013.
Li T, Yang H, Lu Y, Dong Q, Liu G, Chen F, Zhou Y. 2021. Comparative transcriptome analysis of differentially expressed genes related to the physiological changes of yellow-green leaf mutant of maize. PeerJ 9: e10567. DOI: 10.7717/peerj.10567.
Liu X, Cai H-M, Wang W-Q, Lin W, Su Z-W, Ma Z-H. 2023. Why is the beautyberry so colourful? Evolution, biogeography, and diversification of fruit colours in Callicarpa (Lamiaceae). Plant Divers 45 (1): 6-19. DOI: 10.1016/j.pld.2022.10.002.
Lu L, Fritsch PW, Matzke NJ, Wang H, Kron KA, Li D-Z, Wiens JJ. 2019. Why is fruit colour so variable? Phylogenetic analyses reveal relationships between fruit-colour evolution, biogeography and diversification. Glob Ecol Biogeogr 28 (7): 891-903. DOI: 10.1111/geb.12900.
Lv Y, Amanullah S, Liu S, Zhang C, Liu H, Zhu Z, Zhang X, Gao P, Luan F. 2022. Comparative transcriptome analysis identified key pathways and genes regulating differentiated stigma color in Melon (Cucumis melo L.). Intl J Mol Sci 23 (12): 6721. DOI: 10.3390/ijms23126721.
Marcel H, Javier M-GJ, Emilio C, Roman H, Luis RLJ. 2024 Seed shape and size of Silene latifolia, differences between sexes, and influence of the parental genome in hybrids with Silene dioica. Front Plant Sci 15: 1297676. DOI: 10.3389/fpls.2024.1297676.
Martin-Ducup O, Schneider R, Fournier RA. 2018. Analyzing the vertical distribution of crown material in mixed stand composed of two temperate tree species. Forests 9 (11): 673. DOI: 10.3390/f9110673.
Martono B, Udarno L, Putra S. 2022. The diversity of morphological characters of Robusta coffee germplasm. AIP Conf Proc 2563: 050017. DOI: 10.1063/5.0103529.
Mau YS, Ndiwa ASS, Bunga W, Abidin Z, Harini TS, Oematan SS, Roefaida E, Taloim A, Gadji A, Risnawati M, Nana RA. 2023. Inheritance of seed coat color and heritability of agronomic characters of F2 population of reciprocal crosses between Fore Belu and Local Sabu mungbean varieties. Biodiversitas 24 (5): 2647-2656. DOI: 10.13057/biodiv/d240517.
Mong ALA, Razili RM. 2022. Flower development of crystal Longan (Pometia pinnata J.R.Forst & G.Forst). e-Proc 2nd Intl Sci Conf Indigenous Crops. Faculty of Agricultural Science and Forestry, Universiti Putra Malaysia Bintulu, Sarawak. 21-24 September 2022.
Munirah, Malaka R, Maruddin F. 2020. Antioxidant activity of milk pasteurization by addition of matoa leaf extract (Pometia pinnata). IOP Conf Ser: Earth Environ Sci 492: 012046. DOI: 10.1088/1755-1315/492/1/012046.
Nahdloh EDR, Hermawan LA, Akmalia HA, Adawiyah PR. 2022. The study of taxonomic affinity in 7 species of Asteraceae family based on morphological characters. J Sains Dasar 11 (2): 78-82. DOI: 10.21831/jsd.v11i2.52351.
Neguse TB, Wanzala FKR, Ali WM, Mwangi GS, Owino WO. 2019. Phenotype characterization and diversity assessment of mango (Mangifera indica L.) cultivars in Ethiopia. J Plant Breed Crop Sci 11 (2): 55-67. DOI: 10.5897/jpbcs2018.0784.
Pagès L. 2019. Analysis and modeling of the variations of root branching density within individual plants and among species. Front Plant Sci 10: 1020. DOI: 10.3389/fpls.2019.01020.
Qiying LI, Fang LI, Rupeng CA, Lei ZH, Yao LI, Huanling LI, Jiabao WA. 2023. Diversity analysis of leaf traits of litchi genetic resources in Hainan. J Trop Biol 14 (6): 628-635. DOI: 10.15886/j.cnki.rdswxb.20220126.
Ranganath KG. 2022. Pigments that colour our fruits: An overview. Erwerbs-Obstbau 64: 535-547. DOI: 10.1007/s10341-022-00698-3.
Rellán-Álvarez R, Lobet G, Dinneny JR. 2016. Environmental control of root system biology. Ann Rev Plant Biol 67: 619-42. DOI: 10.1146/annurev-arplant-043015-111848.
Restuinjaya LA, Simaremare ES, Pratiwi RD. 2019. Optimization of tween 80 and span 60 on cream ethanol extract the leaves matoa (Pometia pinnata) as an antioxidant. J Adv Pharm Res 1 (2): 11-21. DOI: 10.5281/zenodo.3247411.
Rohlf F. 1998. NTSYSpc: Numerical Taxonomy and Multivariate Analysis System. Exeter Software, New York.
Rosmaina, Elfianis R, Almaksur A, Zulfahmi. 2021. Minimal number of morphoagronomic characters required for the identification of pineapple (Ananas comosus) cultivars in peatlands of Riau, Indonesia. Biodiversitas 22 (9): 3854-3862. DOI: 10.13057/biodiv/d220931.
Rosmaina, Warino J, Suhaida, Zulfahmi. 2016. Genetic variability and relationship among durian cultivars (Durio zibethinus Murr.) in the Kampar, Indonesia assessed by RAPD markers. Pak J Biotechnol 13 (2): 87-94.
Setyaningsih R, Susilowati A, Prasetyani D. 2020. Antibacterial activity of endophytic fungi in Pometia pinnata against Staphylococcus aureus and methicillin-resistant Staphylococcus aureus. Biodiversitas 21 (11): 5408-5413. DOI: 10.13057/biodiv/d211148.
Shannon CE, Weaver W. 1949. The Mathematical Theory of Communication. The University of Illinois Press, Urbana.
Sholiha FU, Yuniastuti E, Hartati S. 2024. The matK gene analysis in five types of matoa (Pometia pinnata J.R.Forst. & G.Forst) based on the pericarp colour. J Appl Biol Biotechnol 12 (3): 54-58, DOI: 10.7324/jabb.2024.167495.
Singh B, Chaubey T, Upadhyay DK, Aastik J, Pandey SD. 2014. Morphological characterization of vegetable pea (Pisum sativum L. spp. hortense) genotypes and their application for distinctiveness, uniformity and stability testing. Legume Res 37 (5) : 547-551. DOI: 10.5958/0976-0571.2014.00674.2.
Sun W, Yuan X, Liu Z-J, Lan S, Tsai W-C, Zou S-Q. 2019. Multivariate analysis reveals phenotypic diversity of Euscaphis japonica population. PLoS One 14 (7): e0219046. DOI: 10.1371/journal.pone.0219046.
Tehuayo MN, Hidayatussakinah, Ulfa NA. 2023. Identification of the morphological structure of the matoa plant (Pometia pinnata) in the Campus Environment of the Muhammadiyah University of Education (UNIMUDA) Sorong. Biolearning Journal 10 (1): 25-29. DOI: 10.36232/jurnalbiolearning.v10i1.3702. [Indonesian]
Tesfa M, Tena E, Kebede M. 2024. Characterization and morphological diversity of sugarcane (Saccharum officinarum) genotypes based on descriptor traits. J Crop Improv 38 (1): 40-71. DOI: 10.1080/15427528.2023.2277473.
Thomson LAJ, Thaman RR. 2006. Pometia pinnata (tava), ver. 2.1. In: Elevitch CR (eds). Species Profiles for Pacific Island Agroforestry. Permanent Agriculture Resources, H?lualoa, Hawai‘i.
Toramo E, Desai NM, Amosa F, Diczbalis Y, Dillon N. 2019. Assessing morphological characteristics of elite cocoa accessions (Theobroma
cacao L.) in Makira Island, Solomon Islands. J South Pacific Agric 22: 30-41.
Vernetti FJ, Junior FJV. 2017. Qualitative traits in breeding. In: da Silva FL, Borém A, Sediyama T, Ludke W. (eds). Soybean Breeding. Springer, Cham. DOI: 10.1007/978-3-319-57433-2_5.
Wang M, Chen L, Liang Z, He , Liu W, Jiang B, Yan J, Sun P, Cao Z, Peng Q, Lin Y. 2020. Metabolome and transcriptome analyses reveal chlorophyll and anthocyanin metabolism pathway associated with cucumber fruit skin color. BMC Plant Biol 20 (1): 386. DOI: 10.1186/s12870-020-02597-9.
Wang Y, Liu Z-S, Yang X-Q, Wang Z-Y, Ma L, Tu H-X, Ma Y, Zhou J-T, Zhang J, Wang H, Chen Q, He W, Yang S-F, Li M-Y, Lin Y-X, Zhang Y-T, Zhang Y, Luo Y, Tang H-R, Wang X-R. 2023a. Inheritance analysis of fruit-related traits in Chinese cherry [Cerasus pseudocerasus (Lindl.) G.Don] breeding progenies. Sci Hortic 307: 111519. DOI: 10.1016/j.scienta.2022.111519.
Wang Y, Wang Z, Zhang J, Liu Z, Wang H, Tu H, Zhou J, Luo X, Chen Q, He W, Yang S, Li M, Lin Y, Zhang Y, Zhang Y, Luo Y, Tang H, Wang X. 2023b. Integrated transcriptome and metabolome analyses provide insights into the coloring mechanism of dark-red and yellow fruits in Chinese Cherry [Cerasus pseudocerasus (Lindl.) G. Don]. Intl J Mol Sci 24 (4): 3471. DOI: 10.3390/ijms24043471.
Windarsih G, Efendi M. 2019. Morphological characteristics of flower and fruit in several rambutan (Nephelium lappaceum) cultivars in Serang City, Banten, Indonesia. Biodiversitas 20 (5): 1442-1449. DOI: 10.13057/biodiv/d200537.
Xie J, Yao S, Ming J, Deng L, Zeng K. 2019. Variations in chlorophyll and carotenoid contents and expression of genes involved in pigment metabolism response to oleocellosis in citrus fruits. Food Chem 272: 49-57. DOI: 10.1016/j.foodchem.2018.08.020.
Yan Y, Wen Y, Wang Y, Wu X, Li X, Wang C, Zhao Y. 2024. Metabolome integrated with transcriptome reveals the mechanism of three different color formations in Taxus mairei arils. Front Plant Sci 15: 1330075. DOI: 10.3389/fpls.2024.1330075.
Yuniastuti E, Masailla APD, Nandariyah, Rahmah N. 2023a. Karyotyping of green, yellow and red matoa (Pometia pinnata J.R.Forst. & G.Forst.) from Central Java, Indonesia. Biodiversitas 24 (1): 40-46. DOI: 10.13057/biodiv/d240106.
Yuniastuti E, Yuliana A, Sukaya, Nandariyah. 2023b. Genetic diversity of matoa (Pometia pinnata) species RAPD markers. Sabrao J Breed Genet 55 (6): 1941-1949. DOI: 10.54910/sabrao2023.55.6.8.
Zhang C, Xie D, Bai T, Luo X, Zhang F, Ni Z, Chen Y. 2020. Diversity of a large collection of natural populations of mango (Mangifera indica Linn.) revealed by agro-morphological and quality traits. Diversity 12 (1): 27. DOI: 10.3390/d12010027.
Zhang X, Zhao W, Luo H, Chen L, Peng J, Fan J. 2019. Plant recognition via leaf shape and margin features. Multimed Tools Appl 78: 27463-27489. DOI: 10.1007/s11042-019-07846-0.
Zhang Y, Ma Y, Zhao D, Tang Z, Zhang T, Zhang K, Dong J, Zhang H. 2023. Genetic regulation of lateral root development. Plant Signal Behav 18 (1): 2081397. DOI: 10.1080/15592324.2022.2081397.
Zhao M-H, Li X, Zhang X-X, Zhang H, Zhao X-Y. 2020. Mutation mechanism of leaf color in plants: A review. Forests 11 (8): 851. DOI: 10.3390/f11080851.
Zigene ZD, Asfaw BT, Bitima TD. 2022. Phenotypic diversity of rosemary (Salvia rosmarinus Schleid.) accessions for qualitative characters. Heliyon 8 (12): e11895. DOI: 10.1016/j.heliyon.2022.e11895.
Zulfahmi, Pertiwi SA, Rosmaina, Elfianis R, Gulnar Z, Zhaxybay T, Bekzat M, Zhaparkulova G. 2023. Molecular identification of mother trees of four matoa cultivars (Pometia pinnata Forst & Forst) from Pekanbaru City, Indonesia using RAPD markers. Biodiversitas 24 (3): 1524-1529. DOI: 10.13057/biodiv/d240323.

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