Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia
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Abstract
Abstract. Listihani, Hidayat SH, Wiyono S, Damayanti TA. 2019. Characteristic of Tobacco mosaic virus isolated from cucumber and tobacco collected from East Java, Indonesia. Biodiversitas 20: 2937-2942. Tobacco mosaic virus (TMV) is a newly emerging virus infecting cucumbers in Java, Indonesia. The basic characters of the TMV isolated from cucumber need further study to investigate its differences with that from tobacco. Thus, the research aimed to study the character of both isolates based on their biological, symptomatology and nucleic acid of coat protein (CP) gene properties. The TMV isolates from both cucumber and tobacco were able to infect similar indicator plants with differing symptom expressions, especially on eggplant. Homology of nucleotide and amino acid of coat protein gene among isolates were about 90.3% and 91.0%, and homology to other isolates was about 87.6 to 93.8% and 89.3 to 96.8%, respectively. There were 17 amino acid differences in the CP gene which is presumed to differentiate those two isolates. Phylogenetic analysis CP gene sequences compared with corresponding isolates in GenBank showed the two isolates separated in different clades. The cucumber isolate from Kediri is closely related to tomato isolate from China in clade I, while tobacco isolate from Jember closely related to tobacco isolate from China in clade IIindicating the existence of two differ TMV variants. It will increase the difficulty to manage TMV in the fields.
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Aldaoud R, Dawson WO, Jones GE. 1989. Rapid, random evolution of the genetic structure of replicating Tobacco mosaic virus populations. Intervirology 30: 227-233.
Alexandre MAV, Soares RM, Rivas EB, Duarte LML, Chagas CM, Saunal H, Van Regenmortel MHV, Richtzehain LJ. 2000. Characterization of a strain of Tobacco mosaic virus from Petunia. J Phytopathol 148: 601-607.
Alishiri A, Rakhshandehroo F, Zamanizadeh HR, Palukaitis P. 2013. Prevalence of Tobacco mosaic virus in Iran and evolutionary analyses of the coat protein gene. Plant Pathol J 29: 260-273.
Bendahmane M, Chen I, Asurmendi S, Bazzini AA, Szecsi J, Beachy RN. 2007. Coat protein-mediated resistance to TMV infection of Nicotiana tabacum involves multiple modes of interference by coat protein. Virology 366: 107-116.
Central Bureau of Statistics. 2017. Vegetable Crop Production in Indonesia 2012-2016. Central Bureau of Statistics, Jakarta.
Cherian S, Muniyapppa V. 1998. ELISA based survey and host range of Tomato mosaic tobamovirus. Indian J Virol 14: 65-69.
Chen J, Watanabe Y, Sako N, Ohshima K, Okada Y. 1996. Mapping of host range restriction of the Rakkyo strain of Tobacco mosaic virus in Nicotiana tabacum cv. Bright yellow. Virology 226:198-204.
Chitra TR, Prakash HS, Albrechtsen SE, Shetty HS, Mathur SB. 2002. Indexing of leaf and seed samples of tomato and bell pepper for Tobamoviruses. Indian Phytopathol 55: 84-86.
Choi SK, Yoon JY, Chung BN. 2009. Genome analysis and characterization of a Tobacco mosaic virus isolate infecting balsam (Impatiens balsamina). Arch Virol 154: 881-885.
Crosa JH, Tolmasky ME, Actis LA, Falkow S. 1994. Methods for general and moleculer bacteriology. American Soc Microbiol 36: 365-386.
Culver, JN. 2002. Tobacco mosaic virus assembly and disassembly: determinants in pathogenicity and resistance. Annu Rev Phytopathol 40: 287-308.
Damiri N. 2014. Mixed viral infection and growth stage on chilli (Capsicum annuum L.) production. Trop Agric Sci 37: 275-283.
Daryono BS, Natsuaki KT. 2009. Survey on the occurrence of viruses infecting cucurbits in Yogyakarta and Central Java. Indonesian J Plant Protec 15: 83-89.
Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
[ICTV] International Committee on Taxonomy of Viruses. 2012. Virus Taxonomy: Classification and Nomenclature of Viruses. Elsevier Academic Press, London.
Fraile A, Malpica JM, Aranda MA, Rodriguez-Cerezo E, Garcia-Arenal F. 1996. Genetic diversity in tobacco mild green mosaic tobamovirus infecting the wild plant Nicotiana glauca. Virology 223:148-155.
Hilf, ME, Dawson WO. 1993. The tobamovirus capsid protein functions as a host-specific determinant of long-distance movement. Virology 193:106-114.
Johnson CS, Main CE. 1983. Yield/quality trade-offs of Tobacco mosaic virus-resistant cultivars in relation to disease management. Plant Dis 67: 886-890.
Jung HW, Yun WS, Hahm YI, Kim KH. 2002. Characterization of Tobacco mosaic virus isolated from potato showing yellow leaf mosaic and stunting symptoms in Korea. Plant Dis 86: 112-117.
Kumar S, Udaya SAC, Nayaka SC, Lund OS, Prakash HS. 2011. Detection of Tobacco mosaic virus and Tomato mosaic virus in pepper and tomato by multiplex RT-PCR. Lett Appl Microbiol 53: 359-363.
Letschert B, Gunter A, Lesemann DE, Willingmann P, Heinze C. 2002. Detection and differentiation of serologically cross-reacting Tobamoviruses of economically importance by RT-PCR and RT-PCR-RFLP. J Virol Methods 106:1-10.
Listihani, Hidayat SH, Wiyono S, Damayanti TA. 2018. First report of Tobacco mosaic virus on cucumber [Cucumis sativus (L.)] in Java, Indonesia. Proceeding of IOP Conference Series: Earth and Environmental Science. Bogor Agricultural University, Bogor, 8-9 August 2017. [Indonesian].
Mahendra IBD, Phabiola TA, Yuliadhi KA. 2017. Effect of virus infection several types of decreased production plant tomato (Lycopersicum esculentum) in Kerta Village, Payangan District, Gianyar Regency. J Trop Agroecotech 6: 301-309.
Nassar EA, El-Dougdoug KA, Osman ME, Dawoud RA, Kinawy AH. 2012. Characterization and elimination of a TMV isolate infecting chrysanthemum plants in Egypt. Int J Virol 8: 14-26.
Rodriguez-Cerezo E, Moya A, Garcia-Arenal F. 1989. Variability and evolution of the plant RNA virus Pepper mild mottle virus. J Virol 63:2198-2203.
Somowiyarjo S, Hartono S, Sundari S, Putri SU. 2016. Molecular identification of Tobacco mosaic virus on orchid plants in Sleman, Yogyakarta. Indonesian J Phytopathol 12: 69-73.
Tamura K, Stecher G, Peterson D, Filipski A and Kumar S. 2013. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30: 2725-2729.
Van Regenmortel MHV. 1986. Tobacco mosaic virus, antigenic structure. In: The Plant Viruses, Vol.2. MHV Van Regenmortel and H. Fraenkel-Conrat. Ed. Plenum Press, New York.
Wahyuni WS, Hanapi M, Hartana I. 2008. The presence of Tobacco mosaic virus in the compost extract of cigar tobacco debris. HAYATI J Biosci 11:118-122.
Zaitlin M. 1999. Elucidation of the genome organization of Tobacco mosaic virus. Philos Trans R Soc Lond B Biol Sci 354: 587-591.
Zhu F, Zhou YK, Zhao YQ, Ji ZL. 2018. First report of Tobacco mosaic virus infecting Benincasa hispida in Jiangxi Province in China. J Plant Pathol 100: 341-343.
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