Phylogeographic and molecular characterization of Pronghorn spiny lobster (Panulirus penicillatus Olivier, 1791) in the Southern Coast of Java and Lombok, Indonesia
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Abstract. Irwani, Wijayanti DP, Satria AW, Sabdono A. 2020. Phylogeographic and molecular characterization of Pronghorn spiny lobster (Panulirus penicillatus Olivier, 1791) in the Southern Coast of Java and Lombok, Indonesia. Biodiversitas 21: 5691-5697. Panulirus penicillatus is one of the most important lobster species in Central Java. It is one of the most populous species in the southern part of Java and Lombok. However, uncontrolled catching causes a decrease in the population of P. penicillatus. Despite such human threats, information about the taxonomic status of this species is limited. Several previous reports on the taxonomy of this species have always been based on the morphological features that cause ambiguous identification. Therefore, this study aimed to establish the relationships of P. penicillatus in southern parts of the southern part of Java and Lombok by using the molecular technique. Twelve samples were collected from four study areas of the southern coast of the southern part of Java and Lombok and identified using DNA barcoding technique. DNA barcoding technique was used for the first time to identify P. penicillatus in this region. This study demonstrated that all specimens belonged to P. penicillatus. However, one specimen (PPK-06) showed high intraspecies nucleotide divergence that formed a distinct subclade. Therefore, the specimen (PPK-06) could represent a cryptic species within P. penicillatus that needs to be studied further.
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References
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Swofford, D. L., 1998. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts. Copyright © Smithsonian Institution.
Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougi, and D.G. Higgins. 1997. The Clustal X-Window interface: Flexible strategies for multiple alignment through sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25: 4876-4882.
Wahyudin RA. 2018. Dinamika populasi dan hubungan keragaman genetik sumber daya Spiny Lobster (Panulirus spp). Disertasi. Sekolah Pasca Sarjana Institut Pertanian Bogor.
Carpenter KE, Barber PH, Crandall ED, AblanLagman MCA, Ambariyanto, Mahardika GN, Manjaji-Matsumoto BM, Juinio-Meñez MA, Santos MD, Starger CJ, Toha AHA . 2011. Comparative phylogeography of the coral triangle and implications for marine management. Journal of Marine Biology, 14 pp. http://dx.doi.org/10.1155/ 2011/396982.
Chan TY. 1998. Lobsters. In: FAO species identification guide for fishery purposes. The living marine resources of the Western Central Pacific. Volume 2. Cephalopods, Crustaceans, Holothurians and Sharks. Carpenter K. E., Niem V. H. (eds), Rome: FAO, pp. 687-1396
Chow S, Jeffs A, Miyake Y, Konishi K, Okazaki M, Suzuki N, Abdullah MF, Imai H, Wakabayasi T, Sakai M. 2011. Genetic Isolation between the Western and Eastern Pacific Populations of Pronghorn Spiny Lobster Panulirus penicillatus. PLoS ONE 6(12): e29280. doi:10.1371/journal.pone.0029280
Cockcroft A, MacDiarmid A, Butler M. 2013. Panulirus penicillatus. The IUCN Red List of Threatened Species 2011: e.T169951A6691002. DOI: 10.2305/IUCN.UK.2011-1.RLTS.T169951A6691002.e
Gopal K, Tolley KA, Groeneveld JC, Matthee CA. 2006. Mitochondrial DNA variation in spiny lobster Palinurus
delagoae suggests genetically structured populations in the southwest Indian Ocean. Mar Ecol Prog Ser. 319:191-198. doi:10.3354/meps319191
Haryono,F.E.D., Hutabarat, S., Hutabarat, J., Ambariyantob, 2016. Comparation of Spiny Lobster (Panulirus Sp.)
Populations from Bantul and Cilacap, Central Java, Indonesia. Jurnal Teknologi, 78 (4–2): 51–54
Holthuis LB. 1991. Marine Lobsters of the World: an annotated and illustrated catalogue of species of interest to fisheries known to date. FAO Species Catalogue No. 13. Rome: FAO. pp 1–292
Jones C. 2012. Cultured aquatic species information programme. Panulirus homarus. FAO Fisheries and Aquaculture Department. Retrieved from http://www.fao.org/fishery/culturedspecies/ Panulirus_homarus/en; accessed 6 June 2015). Rome, 12 pp.
Larasati RF, Suadi, Setyobudi E. 2018. Short Communication: Population dynamics of double-spined rock lobster (Panulirus penicillatus Olivier, 1791) in Southern Coast of Yogyakarta. Biodiversitas 19: 337-342
Matsuda, M., Takenouchi, T. Jason S. Goldstein, 2006. The Complete Larval Development of the Pronghorn Spiny Lobster Panulirus penicillatus (Decapoda: Palinuridae) in Culture, Journal of Crustacean Biology, 26(4):579–600
Milton DA, Satria F, Proctor CH, Prasetyo AP, Utama AA, Fauzi M. 2014. Environmental factors in?uencing the recruitment and catch of tropical Panulirus lobsters in southern Java, Indonesia. Continental Shelf Research 91: 247-255
Munro JL. 2000. Fisheries for spiny lobsters in the tropical Indo-West Paci?c. In: B. F. Phillips & J. Kittaka, (eds.), Spiny Lobsters Fisheries and Culture. Second edition, Fishing News Books, Oxford, pp. 90–97.
Ongkers O T, Pattiasina B J, Tetelepta J M S, Natan Y, Pattikawa J A. Some biological aspects of painted spiny lobster
(Panulirus versicolor) in Latuhalat waters, Ambon Island, Indonesia. AACL. 2014;7(6):469–474.
Permana GN, Slamet B, Permana BA, Dewi AY, Mahardika GN. 2019. Population genetic structure of spiny lobsters, Panulirus homarus and Panulirus ornatus, in the Indian Ocean, Coral Triangle, and South China Sea. Indian Aquaculture Journal, 14 (1), 2019, 7-14
Phillips BF, Kittaka J. 2000. Spiny Lobster: Fisheries and Culture. Second edition, Fishing News Books, Oxford.
Phillips BF, Sastry AN (1980) Larval Ecology. In: Cobb JS, Phillips BF, eds. The Biology and Management of Lobster, vol. II, Ecology and Management. New York: Academic Press. pp 11-57.
Setyanto A, Soemarno, Wiadnya DGR, Nugroho C. 2019. Biodiversity of Lobster (Panulirus) from Eastern Indian Ocean of Indonesia Waters. IOP Conf. Ser.: Mater. Sci. Eng. 546 022024
Swofford, D. L., 1998. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts. Copyright © Smithsonian Institution.
Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougi, and D.G. Higgins. 1997. The Clustal X-Window interface: Flexible strategies for multiple alignment through sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25: 4876-4882.
Wahyudin RA. 2018. Dinamika populasi dan hubungan keragaman genetik sumber daya Spiny Lobster (Panulirus spp). Disertasi. Sekolah Pasca Sarjana Institut Pertanian Bogor.
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