Agronomic performance of BC3F2 aromatic rice lines derived from Inpari 32 × Merah Wangi crosses

Main Article Content

MUHAMMAD RASSYA DHIO ANANTA
TRI AGUS SISWOYO
SHOLEH AVIVI
TRI HANDOYO
UMMI SHOLIKAH
TRI RATNASARI
AHMAD ILHAM TANZIL
WAHYU INDRA DUWI FANATA

Abstract

Abstract. Ananta MRD, Siswoyo TA, Avivi S, Handoyo T, Sholikah U, Ratnasari T, Tanzil AI, Fanata WID. 2025. Agronomic performance of BC3F2 aromatic rice lines derived from Inpari 32 × Merah Wangi crosses. Biodiversitas 26: 6417-6426. Aroma is a key grain-quality trait that strongly influences consumer preference and market value in rice. Enhancing fragrance while maintaining high agronomic performance remains a key breeding objective. This study aimed to introgress the BADH2 aromatic allele from Merah Wangi into the high-yielding Inpari 32 background using Marker-Assisted Backcrossing (MAB), and to evaluate the resulting BC32 population for agronomic traits and aroma expression. A total of 98 BC3F2 individuals and both parents were assessed under field conditions. Genotypic screening using the Bradbury marker identified fourteen homozygous BADH2⁻/⁻ plants, confirming successful introgression of the recessive fragrance allele. Agronomic evaluation revealed that the BC3F2 population exhibited a stable heading date, intermediate plant architecture, and improved tillering capacity compared to its parents. Yield-related traits, including filled grain number, productive tillers, and 1000-grain weight, contributed to a higher grain yield per plant compared with both Inpari 32 and Merah Wangi. Grain-quality assessment further indicates a favorable kernel morphology, suggesting effective recombination of grain-size determinants. Organoleptic testing confirmed consistent aromatic expression across all homozygous lines, demonstrating strong agreement between molecular genotype and fragrance phenotype. Although segregation deviated from the expected 1:2:1 Mendelian ratio, the reliable identification of homozygous aromatic plants indicates that the fragrance trait was effectively fixed in this generation. Overall, the results highlight the efficiency of MAB for transferring recessive fragrance alleles into the elite rice backgrounds while maintaining desirable agronomic performance. The fourteen BC3F2 aromatic lines represent promising materials for further advancement, multilocation evaluation, and potential development of high-yielding aromatic derivatives of Inpari 32.

Article Details

Section

Articles

References

Adhi A, Aryanto G, Kusumaningrum N. 2024. Policy pathway to resilience: Shifting to high-yielding rice seeds to reduce emissions and strengthen rice production in Indonesia. Bio Web Conf 119: 01002. DOI: 10.1051/bioconf/202411901002.

Bai X, Zhao H, Huang Y, Xie W, Han Z, Zhang B, Guo Z, Yang L, Dong H, Xue W, Li G, Hu G, Hu Y, Xing Y. 2016. Genome-wide association analysis reveals different genetic control in panicle architecture between Indica and Japonica rice. Plant Genome 9 (2): plantgenome2015.11.0115. DOI: 10.3835/plantgenome2015.11.0115.

Behera PK, Panda D. 2023. Germplasm resources, genes and perspective for aromatic rice. Rice Sci 30 (4): 294-305. DOI: 10.1016/j.rsci.2023.03.011.

Bintoro N, Zahra AI. 2022. Effects of moisture content and grain type on mechanical properties of white rice: Literature review and experiment. Indones J Sci Technol 7: 337-362. DOI: 10.17509/ijost.v7i2.50887.

Bradbury LMT, Fitzgerald TL, Henry RJ, Jin Q, Waters DLE. 2005a. The gene for fragrance in rice. Plant Biotechnol J 3 (3): 363-370. DOI: 10.1111/j.1467-7652.2005.00131.x.

Bradbury LMT, Henry RJ, Jin Q, Reinke RF, Waters DLE. 2005b. A perfect marker for fragrance genotyping in rice. Mol Breed 16: 279-283. DOI: 10.1007/s11032-005-0776-y.

Calingacion M, Laborte A, Nelson A et al. 2014. Diversity of global rice markets and the science required for consumer-targeted rice breeding. PLoS One 9 (1): e85106. DOI: 10.1371/journal.pone.0085106.

Chen S, Yang Y, Shi W, Ji Q, He F, Zhang Z, Cheng Z, Liu X, Xu M. 2008. BADH2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance. Plant Cell 20: 1850-1861. DOI: 10.1105/tpc.108.058917.

Dutta C, Nath DJ, Phyllei D. 2022. Aromatic rice and factors affecting aroma in rice. Intl J Environ Clim Change 12 (11): 1773-1779. DOI: 10.9734/ijecc/2022/v12i1131162.

Ferreira JP, Schmildt ER, Schmildt O, Cattaneo LF, Alexandre RS, Cruz CD. 2016. Comparison of methods for classification of the coefficient of variation in papaya. Rev Ceres 63 (2): 138-144. DOI: 10.1590/0034-737x201663020004.

Hui S, Li H, Mawia AM, Zhou L, Cai J, Ahmad S, Lai C, Wang J, Jiao G, Xie L, Shao G, Sheng Z, Tang S, Wang J, Wei X, Hu S, Hu P. 2022. Production of aromatic three-line hybrid rice using novel alleles of BADH2. Plant Biotechnol J 20 (1): 59-74. DOI: 10.1111/pbi.13695.

Imran M, Shafiq S, Ashraf U, Qi J, Mo Z, Tang X. 2023. Biosynthesis of 2-acetyl-1-pyrroline in fragrant rice: Recent insights into agro-management, environmental factors, and functional genomics. J Agric Food Chem 71 (10): 4201-4215. DOI: 10.1021/acs.jafc.2c07934.

IRRI. 2013. Standard Evaluation System (SES) for Rice (5th eds). International Rice Research Institute, Los Baños, Laguna, Philippines.

Kumar M, Singh RP, Jena D, Singh V, Rout D, Arsode PB, Choudhary M, Singh P, Chahar S, Samantaray S. 2023. Marker-assisted improvement for durable bacterial blight resistance in aromatic rice cultivar HUR 917 popular in eastern parts of India. Plants 12 (6): 1363. DOI: 10.3390/plants12061363.

Li N, Xu R, Duan P, Li Y. 2018. Control of grain size in rice. Plant Reprod 31 (3): 237-251. DOI: 10.1007/s00497-018-0333-6.

Liang Z, Ruiz-Menjivar J, Zhang L, Zhang J, Shen X. 2024. Examining the effects of adopting early maturing crop varieties on agricultural productivity, climate change adaptation, and mitigation. Intl J Low-Carbon Technol 19: 1256-1274. DOI: 10.1093/ijlct/ctad150.

Liu F, Wang P, Zhang X, Li X, Yan X, Fu D, Wu G. 2017. The genetic and molecular basis of crop height based on a rice model. Planta 247 (1): 1-26. DOI: 10.1007/s00425-017-2798-1.

Matsushita S, Iseki T, Fukuta Y, Araki E, Kobayashi S, Osaki M, Yamagishi M. 2003. Characterization of segregation distortion on chromosome 3 induced in wide hybridization between Indica and Japonica type rice varieties. Euphytica 134: 27-32. DOI: 10.1023/a:1026182312730.

Okpala NE, Mo Z, Duan M, Tang X. 2019. The genetics and biosynthesis of 2-acetyl-1-pyrroline in fragrant rice. Plant Physiol Biochem 135: 272-276. DOI: 10.1016/j.plaphy.2018.12.012.

Sagar V, Dhawan G, Krishnan SG, Vinod KK, Ellur RK, Mondal KK, Rathour R, Prakash G, Nagarajan M, Bhowmick PK, Bollinedi H, Singh AK. 2020. Marker assisted introgression of genes governing resistance to bacterial blight and blast diseases into an elite Basmati rice variety, ‘Pusa Basmati 1509’. Euphytica 216: 16. DOI: 10.1007/s10681-019-2549-4.

Shang X-L, Xie R-R, Tian H, Wang Q-L, Guo F-Q. 2016. Putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice. J Integr Plant Biol 58 (7): 627-641. DOI: 10.1111/jipb.12444.

Singh A, Singh VK, Singh SP, Pandian RTP, Ellur RK, Singh D, Bhowmick PK, Krishnan SG, Nagarajan M, Vinod KK, Singh UD, Prabhu KV, Sharma TR, Mohapatra T, Singh AK. 2012. Molecular breeding for the development of multiple disease resistance in Basmati rice. AoB Plants 2012: pls029. DOI: 10.1093/aobpla/pls029.

Sood BC, Siddiq EA. 1978. A rapid technique for scent determination in rice. Indian J Genet Plant Breed 38: 268-271.

Vanavichit A, Kamolsukyeunyong W, Siangliw M, Siangliw JL, Traprab S, Ruengphayak S, Chaichoompu E, Saensuk C, Phuvanartnarubal E, Toojinda T, Tragoonrung S. 2018. Thai Hom Mali rice: Origin and breeding for subsistence rainfed lowland rice system. Rice 11: 20. DOI: 10.1186/s12284-018-0212-7.

Varatharajan N, Sekaran DC, Murugan K, Chockalingam V. 2021. Rice aroma: Biochemical, genetics and molecular aspects and its extraction and quantification methods. In: Huang M (eds). Integrative Advances in Rice Research. IntechOpen, London. DOI: 10.5772/intechopen.98913.

Wang S, Tan Y, Tan X, Zhang Z, Wen J, Kou S. 2009. Segregation distortion detected in six rice F2 populations generated from reciprocal hybrids at three altitudes. Genet Res (Camb) 91 (5): 345-353. DOI: 10.1017/s0016672309990176.

Wang Y, Tang S, Guo N, An R, Ren Z, Hu S, Wei X, Jiao G, Xie L, Wang L. 2023. Pyramiding rice blast resistance gene Pi2 and fragrance gene BADH2. Agronomy 13 (2): 589. DOI: 10.3390/agronomy13020589.

Xu Y, Zhu L, Xiao J, Huang N, McCouch SR. 1997. Chromosomal regions associated with segregation distortion of molecular markers in F2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L.). Mol Gen Genet 253: 535-545. DOI: 10.1007/s004380050355.

Xuedan L, Fan L, Yunhua X, Feng W, Guilian Z, Huabing D, Wenbang T. 2023. Grain shape genes: Shaping the future of rice breeding. Rice Sci 30 (5): 379-404. DOI: 10.1016/j.rsci.2023.03.014.

Yang DS, Lee K-S, Jeong O-Y, Kim K-J, Kays SJ. 2008. Characterization of volatile aroma compounds in cooked black rice. J Agric Food Chem 56 (1): 235-240. DOI: 10.1021/jf072360c.

Most read articles by the same author(s)