First genetic record and the phylogenetic relationship of Osteochilus spilurus (Cyprinidae: Labeoninae ) originating from Bangka and Belitung Islands, Indonesia
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Abstract. Kurniawan A, Hariati AM, Kurniawan A, Wiadnya DGR. 2021. First genetic record and the phylogenetic relationship of Osteochilus spilurus (Cyprinidae: Labeoninae) originating from Bangka and Belitung Islands, Indonesia. Biodiversitas 22: 794-802. Osteochilus spilurus is a freshwater fish from Southeast Asia. Species identification for this fish in Indonesia is still solely limited to morphological characteristics. Therefore it is highly important to validate using short DNA sequences that have been proven to be fast, effective, and accurate. Fish specimens were collected from Lenggang river in Belitung island, and Lebak river in Bangka island, Indonesia. Mitochondrial cytochrome b gene (cyt b, 408 bp) was amplified and sequenced. We collected fish specimens from Lenggang River in Belitung Island and Lebak River in Bangka Island, Indonesia. The results suggested that individuals from both islands are clustered together with a strong bootstrap value (100%) in a monophyletic clade. The specimens deposited at NCBI as the first Indonesian genetic records. They have a sister lineage to individuals from Sabah, Malaysia, although supported by a low bootstrap value. While geographical connection during the Pleistocene period allowed wide distribution of the species, differences in the evolutionary processes of historical biogeography and environmental changes are the predicted cause of the low genetic similarity. These findings can be used as a sequence reference and basic information for conservation of this species.
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References
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Avise JC. 2009. Phylogeography: retrospect and prospect. Journal of Biogeography 36 (1):3-15.
De Bruyn M, Nugroho E, Hossain MM, Wilson JC, Mather PB. 2005. Phylogeographic evidence for the existence of an ancient biogeographic barrier: the Isthmus of Kra Seaway. Heredity 94 (3): 370-378.
Esa YB., Japning R., Rahim KA., Siraj SS., Daud SK., Tan SG., Sungan S. 2012. Phylogenetic Relationships among Several Freshwater Fishes (Family: Cyprinidae) in Malaysia Inferred from Partial Sequencing of the Cytochrome b Mitochondrial DNA (mtDNA) Gene. Pertanika J. Trop. Agric. Sci. 35 (2): 307 – 318
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Hall R, Morle CK. 2004. Sundaland basins. Continent-ocean interactions within East Asian marginal seas, 55-85.
Haryono, G. Wahyudewantoro. 2020. The freshwater fishes and species status of peatland areas in Central Kalimantan, Indonesia. Eco. Env. & Cons. 26 (June Suppl. Issue). S14-S19
Hsieh HM, Chiang HL, Tsai LC, Lai SY, Huang NE, Linacre A, Lee JCI. 2001. Cytochrome b gene for species identification of the conservation animals. Forensic Science International 122 (1): 7-18.
Huckstorf V. 2012. Osteochilus spilurus. The IUCN Red List of Threatened Species 2012: e.T181063A1694304.
Ibrahim I, Haryadi D, Wahyudin N. 2018. From charm to sorrow: The dark portrait of tin mining in Bangka Belitung, Indonesia. PEOPLE: International Journal of Social Sciences 4 (1) :360-382.
Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
Kottelat M, Whitten AJ, Kartikasari SN, Wirjoatmodjo S. 1993. Freshwater fishes of Western Indonesia and Sulawesi. Periplus Editions. Hong Kong.
Kurniawan A, Azhari M, Prasetiyono E. 2019. Domestication of Osteochilus spilurus: survival and growth in recirculated water. IOP Conference Series: Earth and Environmental Science 230 (1):p.012116. DOI:10.1088/1755-1315/230/1/012116
Kurniawan A, Hariati AM, Darmawan A., Wiadnya DGR. 2020. Morphometric comparison of Osteochilus spilurus (Bleeker 1851) from Bangka and Belitung Island, Indonesia. In IOP Conference Series: Earth and Environmental Science 493 (1): 012024. DOI: 10.1088/1755-1315/493/1/012024.
Kurniawan A, Triswiyana I. 2019. Perception of The Economics Utilization and Sustainability of Cempedik Fish (Osteochilus Spilurus) in East Belitung Regency. ECSOFiM (Economic and Social of Fisheries and Marine) 7 (1): 109-119. [Indonesia]
Kurniawan A., Kurniawan A., Fakhrurrozi Y. 2019. Potential development of Cempedik fish (Osteochilus spilurus) in East Belitung: a study of consumption, handling, and nutrition. Acta Aquatica: Aquatic Sciences Journal, 6 (1), 32-36. DOI:10.29103/aa.v6i1.1262 [In Indonesian with abstract in English]
Kusuma WE, Samuel PD, Wiadnya DGR, Hariati AM, Kumazawa Y. 2017. Complete mitogenome sequence of Rasbora argyrotaenia (Actinopterygii: Cyprinidae). Mitochondrial DNA Part B, 2(2), 373-374.
Muslih K, Adiwilaga EM, Adiwibowo S. 2014. Habitat characteristics and diversity of freshwater fish in the Menduk River that have been affected by tin mining in Bangka Regency. Akuatik: Journal of Aquatic Resources, 8 (2), 17-23.
Mustikasari D, Nuryanto A, Prabowo RE. 2018. The Morphological Characteristics of Cempedik Fish from Belitung Island. In The SEA+ Conference on Biodiversity and Biotechnology 2018, Purwokerto, Indonesia, 07 November 2018.
National Center for Biotechnology Information (NCBI). Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information [cited 09 September 2020]. Available from: https://www.ncbi.nlm.nih.gov/nuccore/?term=osteochilus%20spilurusNurtjahya E, Franklin J, Agustina F. 2017. The Impact of tin mining in Bangka Belitung and its reclamation studies. In MATEC Web of Conferences EDP Sciences 101: 04010.
Palumbi S, Martin A, Romano S, McMillan WO, Stice L, Grabowski G. 1991. The Simple Fool’s Guide To PCR. University of Hawaii: Dept. of Zool. & Kewalo Marine Laboratory Publication.
Radona D, Anang HK., Kurniawan K., Suparman, Edian T., Dodot DL. 2020. A preliminary study of Osteochilus spilurus (Bleeker 1851) domestication: sex identification and bio-reproductive characters. Journal of Fisheries and Aquatic Science. 15 (2): 35-41. DOI: 10.3923/jfas.2020.35.41
Tan MP, Jamsari AFJ, Azizah MNS. 2012. Phylogeographic pattern of the striped snakehead, Channa striata in Sundaland: ancient river connectivity, geographical and anthropogenic singnatures. PLoS One, 7(12), e52089.
Voris HK. 2000. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems, and time durations. Journal of Biogeography 27 (5): 1153-1167.
Ward RD, Hanner R, Hebert PD. 2009. The campaign to DNA barcode all fishes, FISH?BOL. Journal of fish biology 74(2) : 329-356.
Weber MWC, de Beaufort LF. 1916. The Fishes of the Indo-Australian Archipelago. Volume 3. EJ Brill Limited.
Yang L, Arunachalam M, Sado T, Levin BA, Golubtsov AS, Freyhof J, Friel JP, Chen W, Hirt MV, Manickam R, Agnew MK, Simons AM, Saitoh K, Miya M, Mayde RL. 2012. Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution 65 (2): 362-379.
Zaccara S, Stefani F, Delmastro GB. 2007. Phylogeographical structure of vairone Telestes muticellus (Teleostei, Cyprinidae) within three European peri?Mediterranean districts. Zoologica Scripta 36 (5) : 443-453.
Avise JC. 2009. Phylogeography: retrospect and prospect. Journal of Biogeography 36 (1):3-15.
De Bruyn M, Nugroho E, Hossain MM, Wilson JC, Mather PB. 2005. Phylogeographic evidence for the existence of an ancient biogeographic barrier: the Isthmus of Kra Seaway. Heredity 94 (3): 370-378.
Esa YB., Japning R., Rahim KA., Siraj SS., Daud SK., Tan SG., Sungan S. 2012. Phylogenetic Relationships among Several Freshwater Fishes (Family: Cyprinidae) in Malaysia Inferred from Partial Sequencing of the Cytochrome b Mitochondrial DNA (mtDNA) Gene. Pertanika J. Trop. Agric. Sci. 35 (2): 307 – 318
Fahmi M, Ginanjar RR, Kusumah RV. 2015. Diversity of Ornamental Fish in the Biosphere Reserve of Bukit Batu Peatlands, Riau Province. Proceedings of the National Seminar on Indonesian Biodiversity Society 1 (2). [Indonesia]
Hall R, Morle CK. 2004. Sundaland basins. Continent-ocean interactions within East Asian marginal seas, 55-85.
Haryono, G. Wahyudewantoro. 2020. The freshwater fishes and species status of peatland areas in Central Kalimantan, Indonesia. Eco. Env. & Cons. 26 (June Suppl. Issue). S14-S19
Hsieh HM, Chiang HL, Tsai LC, Lai SY, Huang NE, Linacre A, Lee JCI. 2001. Cytochrome b gene for species identification of the conservation animals. Forensic Science International 122 (1): 7-18.
Huckstorf V. 2012. Osteochilus spilurus. The IUCN Red List of Threatened Species 2012: e.T181063A1694304.
Ibrahim I, Haryadi D, Wahyudin N. 2018. From charm to sorrow: The dark portrait of tin mining in Bangka Belitung, Indonesia. PEOPLE: International Journal of Social Sciences 4 (1) :360-382.
Kimura M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
Kottelat M, Whitten AJ, Kartikasari SN, Wirjoatmodjo S. 1993. Freshwater fishes of Western Indonesia and Sulawesi. Periplus Editions. Hong Kong.
Kurniawan A, Azhari M, Prasetiyono E. 2019. Domestication of Osteochilus spilurus: survival and growth in recirculated water. IOP Conference Series: Earth and Environmental Science 230 (1):p.012116. DOI:10.1088/1755-1315/230/1/012116
Kurniawan A, Hariati AM, Darmawan A., Wiadnya DGR. 2020. Morphometric comparison of Osteochilus spilurus (Bleeker 1851) from Bangka and Belitung Island, Indonesia. In IOP Conference Series: Earth and Environmental Science 493 (1): 012024. DOI: 10.1088/1755-1315/493/1/012024.
Kurniawan A, Triswiyana I. 2019. Perception of The Economics Utilization and Sustainability of Cempedik Fish (Osteochilus Spilurus) in East Belitung Regency. ECSOFiM (Economic and Social of Fisheries and Marine) 7 (1): 109-119. [Indonesia]
Kurniawan A., Kurniawan A., Fakhrurrozi Y. 2019. Potential development of Cempedik fish (Osteochilus spilurus) in East Belitung: a study of consumption, handling, and nutrition. Acta Aquatica: Aquatic Sciences Journal, 6 (1), 32-36. DOI:10.29103/aa.v6i1.1262 [In Indonesian with abstract in English]
Kusuma WE, Samuel PD, Wiadnya DGR, Hariati AM, Kumazawa Y. 2017. Complete mitogenome sequence of Rasbora argyrotaenia (Actinopterygii: Cyprinidae). Mitochondrial DNA Part B, 2(2), 373-374.
Muslih K, Adiwilaga EM, Adiwibowo S. 2014. Habitat characteristics and diversity of freshwater fish in the Menduk River that have been affected by tin mining in Bangka Regency. Akuatik: Journal of Aquatic Resources, 8 (2), 17-23.
Mustikasari D, Nuryanto A, Prabowo RE. 2018. The Morphological Characteristics of Cempedik Fish from Belitung Island. In The SEA+ Conference on Biodiversity and Biotechnology 2018, Purwokerto, Indonesia, 07 November 2018.
National Center for Biotechnology Information (NCBI). Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information [cited 09 September 2020]. Available from: https://www.ncbi.nlm.nih.gov/nuccore/?term=osteochilus%20spilurusNurtjahya E, Franklin J, Agustina F. 2017. The Impact of tin mining in Bangka Belitung and its reclamation studies. In MATEC Web of Conferences EDP Sciences 101: 04010.
Palumbi S, Martin A, Romano S, McMillan WO, Stice L, Grabowski G. 1991. The Simple Fool’s Guide To PCR. University of Hawaii: Dept. of Zool. & Kewalo Marine Laboratory Publication.
Radona D, Anang HK., Kurniawan K., Suparman, Edian T., Dodot DL. 2020. A preliminary study of Osteochilus spilurus (Bleeker 1851) domestication: sex identification and bio-reproductive characters. Journal of Fisheries and Aquatic Science. 15 (2): 35-41. DOI: 10.3923/jfas.2020.35.41
Tan MP, Jamsari AFJ, Azizah MNS. 2012. Phylogeographic pattern of the striped snakehead, Channa striata in Sundaland: ancient river connectivity, geographical and anthropogenic singnatures. PLoS One, 7(12), e52089.
Voris HK. 2000. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems, and time durations. Journal of Biogeography 27 (5): 1153-1167.
Ward RD, Hanner R, Hebert PD. 2009. The campaign to DNA barcode all fishes, FISH?BOL. Journal of fish biology 74(2) : 329-356.
Weber MWC, de Beaufort LF. 1916. The Fishes of the Indo-Australian Archipelago. Volume 3. EJ Brill Limited.
Yang L, Arunachalam M, Sado T, Levin BA, Golubtsov AS, Freyhof J, Friel JP, Chen W, Hirt MV, Manickam R, Agnew MK, Simons AM, Saitoh K, Miya M, Mayde RL. 2012. Molecular phylogeny of the cyprinid tribe Labeonini (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution 65 (2): 362-379.
Zaccara S, Stefani F, Delmastro GB. 2007. Phylogeographical structure of vairone Telestes muticellus (Teleostei, Cyprinidae) within three European peri?Mediterranean districts. Zoologica Scripta 36 (5) : 443-453.
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