Swampy rice lines for iron toxicity tolerance and yield components performance under inland swamp at Sorong, West Papua, Indonesia
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Abstract. Maruapey A, Wicaksana N, Karuniawan A, Utami DW, Windarsih G. 2020. Swampy rice lines performance for iron toxicity tolerance and yield components under inland swamp at Sorong, West Papua, Indonesia. Biodiversitas 21: 5394-5402. The extensification of sub-optimal lowland farming strategy is expected to support the increase of rice production. Based on the efforts, the development of tolerant rice varieties to Fe-toxicity to be used in the swampy land area is one of the approaches for increasing rice production. Currently, promising rice lines that are tolerant to Fe-toxicity has been developed using molecular breeding approach for inland swampy area. The objective of this research was to evaluate the performance of 15 promising rice lines that have various genetic backgrounds in inland swamp in Sorong, West Papua. The field experiment was conducted during the second rice planting season (August 2018 to February 2019) to evaluate the performance of the promising rice lines to the morpho-agronomic performance under the lowland swamp conditions. The trial was laid out in a Randomized Complete Block Design (RCBD) consisting of 4 m x 5 m square plots, with 25 cm x 25 cm planting distance and 3 replications. The results revealed that most of the lines had good performances on the Fe-toxicity tolerance, based on bronzing, root length, and biomass characters. The G1 line had the best performance on yield component characters, especially the panicle length. This line also had the highest grain yield (6.15 ton.ha-1) followed by the next promising line of G7 (5.92 ton.ha-1). The genetic performance of these lines showed that they contained IRT (Iron Regulation Transporter) alleles that contributed to partitioning the Fe tolerance mechanism.
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References
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Vert G, Briat JF, Curir C. 2001. Arabidopsis IRT2 gene encodes a root-periphery iron transporter. Plant J 26: 181-189.
Virmani SS. 1977. Varietal tolerance of rice to iron toxicity in Liberia. Int Rice Res Newsl 2: 4-5.
White RE. 2005. Principles and Practices of Soil Science: The Soil as A Natural Resource. 4th edition. John Wiley and Sons Ltd., Chicester, United Kingdom.
Widjaja-Adhi IPG, Nugroho K, Ardi D, Karim AS. 1992. Sumber daya lahan rawa: Potensi, keterbatasan dan pemanfaatannya. In: Sutjipto P, Syam M (eds). Prosiding Nasional Pengembangan Pertanian Lahan Rawa Pasang Surut dan Lebak. Badan Penelitian dan Pengembangan Pertanian. Departemen Pertanian, Cisarua, Bogor, 3-4 Maret [Indonesia]
Wu LB, Shhadi M, Gregorio G, Matthus E, Becker M, Frei M. 2014. Genetic and physiological analysis of tolerance to acute iron toxicity in rice. Rice 7 (8): 1-12. DOI: 10.1186/s12284-014-0008-3.
Wu LB, Ueda Y, Lai SK, Frei M. 2017. Shoot tolerance mechanisms to iron toxicity in rice (Oryza sativa L.). Plant Cell Environ 40: 570-584. DOI: 10.1111/pce.12733.
Ye Q, Zhang H, Wei H, Zhang Y, Wang B, Xia K, Hou Z, Dai Q, Xu K. 2007. Effect of nitrogen fertilizer on nitrogen use efficiency on yield of rice under different soil condition. Front Agr China 1 (1): 30-36.
Zhang Y, Xu YH, Yi HY, Gong JM. 2012. Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice. Plant J 72: 400-410. DOI: 10.1111/j.1365-313X.2012.05088.x.
Becker M, Asch F. 2005. Iron toxicity in rice-conditions and management concepts. J Plant Nutr Soil Sci 168: 558-573.
Bennett SA, Hansman RL, Sessions AL, Nakamura K, Edwards KJ. 2011. Tracing iron-fueled microbial carbon production within the hydrothermal plume at the Loihi Seamount. Acta 75: 5526-5555.
Doyle JJ, Doyle JL. 1987. A rapid DNA isolation from small amount of fresh leaf tissue. Phytochem Bull 19: 11-15.
Finatto T, de Oliveira AC, Chaparro C, da Maia LC, Farias DR, Woyann LG. 2015. Abiotic stress and genome dynamics: Specific genes and transposable elements response to iron excess in rice. Rice 8 (13): 1-18. DOI: 10.1186/ s12284-015-0045-6.
Hairmansis A, Kustianto B, Supartopo, Suwarno. 2010. Correlation analysis of agronomic characters and grain yield of rice for tidal swamp areas. Indones J Agric Sci 11(1): 11-15.
Harahap Z, Silitonga TS. 1998. Perbaikan varietas padi. In: Ismunadji M, Syam M, Yuswadi (eds). Padi, Book 2. Pusat Penelitian dan Pengembangan Tanaman Pangan, Bogor.
Irawan B. 2005. Konversi lahan sawah: Potensi dampak, pola pemanfaatannya dan faktor determinan. Jurnal Forum Penelitian Agro Ekonomi 23(21): 1-18.
Irmawati, Hiroshi E, Rujito AS, Sakagami JI. 2015. Swamp rice cultivation in South Sumatra, Indonesia: An overview. Trop Agr Develop 59 (1): 35-39.
IRRI [International Rice Research Institute]. 2014. Standard Evaluation System for Rice. 4th edition. International Rice Research Institute, Los Banos, Philippines.
Koesrini SM, Nurzakia S. 2018. Adaptasi agronomi padi unggul varietas Inpara pada lahan rawa pasang surut. Jurnal Penelitian Tanaman Pangan 2 (2): 77-83.
Kustianto B. 2009. Produktivitas galur harapan padi di lahan pasang surut dan rawa Lebak. Jurnal Penelitian Pertanian Tanaman Pangan 28 (1): 34-38.
Li R, Meijuan L, Umair A, Shiwei L, Jiaen Z. 2019. Exploring the relationship between yield and yield-related traits for rice varieties released in China from 1987 to 2017. Front Plant Sci 10: 535-543.
Mohanty M, Sinha NK, Reddy KS, Chaudhary RS, Rao AS, Dalal RC, Menzies NW. 2013. How important is the quality of organic amendments in relation mineral N availability in soils? Agric Res 2 (2): 99-110.
Mulyani A, Nursyamsi D, Syakir M. 2017. Strategi pemanfaatan sumberdaya lahan untuk pencapaian swasembada beras berkelanjutan. Jurnal Sumberdaya Lahan 11 (1): 11-22.
Müller C, Silveira SFD, Daloso DM, Mendes GC, Merchant A, Kuki KN. 2017. Ecophysiological responses to excess iron in lowland and upland rice cultivars. Chemosphere 189: 123-133. DOI: 10.1016/j.chemosphere. 2017.09.033.
Naylor RL, Battisti DS, Vimont DJ, Falcon WP, Burke MB. 2007. Assessing risks of climate variability and climate change for Indonesian rice agriculture. Proc Natl Acad Sci USA 104: 7752-7757.
Noor M. 2007. Rawa Lebak, ekologi, pemanfaatan dan pengembangannya. In: Hakimah Halim (ed). Pertanian Rawa Lebak. Raja Grafindo Persada, Jakarta.
Nugraha Y, Rumanti AI. 2017. Perakitan varietas padi toleran keracunan besi. Jurnal Iptek Tanaman Pangan 12 (1): 9-24.
Oladosu Y, Rafii MY, Abdullah N, Malek MA, Rahim HA, Hussin G, Latif MA, Kareem I. 2014. Genetic variability and selection criteria in rice mutant lines as revealed by quantitative traits. Sci World J 2014: 1-12.
Peterson RG. 1994. Agricultural Field Experiment Design and Analysis. Marcel Dekker, Inc., New York.
Quinet M, Vromman D, Clippe A, Bertin P, Lequeux H, Dufey I. 2012. Combined transcriptomic and physiological approaches reveal strong differences between short- and long-term response of rice (Oryza sativa) to iron toxicity. Plant Cell Environ 35: 1837-1859. DOI: 10.1111/j.1365-3040.2012. 02521.
Rout GR, Sahoo S. 2015. Role of iron in plant growth and metabolism. Rev Agric Sci 3: 1-24.
Singh BP, Das M, Prasad RN, Ram M. 1992. Characteristic of Fe toxic soils and affected plants and their correction in acid Haplaquents of Meghalaya. Int Rice Res Newsl 17: 18-19.
Suhartini T. 2004. Perbaikan varietas padi untuk lahan keracunan Fe. Buletin Plasma Nutfah 10 (1): 1-11.
Sulaiman AA, Sulaeman Y, Minasny B. 2019. A framework for the development of wetland for agricultural use in Indonesia. Resources 8 (34): 1-16.
Stein RJ, Ricachenevsky FK, Fett JP. 2009. Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2). Plant Sci 177: 563-569.
Stein RJ, Duarte GL, Scheunemann L, Sophr MG, Junior ATA, Ricachenevsky FK, Rosa LMG, Zanchin NIT, Santos RP, Fett JP. 2019. Genotype variation in rice (Oryza sativa L.) tolerance to Fe toxicity might be linked to root cell wall lignification. Front Plant Sci 10: 1-20. DOI: 10.3389/fpls.2019.00746.
Utami DW. 2018. Teknologi pemuliaan molekuler dukung optimalisasi pertanian lahan rawa. In: Sabran M, Lestari EG, Utami DW, Purnamaningsih R, Suryadi Y, Tasma IM, Mastur, Sustiprijatno, Wibisono RAS (eds). Pemanfaatan SDG dan Bioteknologi untuk Mendukung Pertanian Berkelanjutan. IAARD Press, Jakarta.
Utami DW, Rosdianti I, Subardi, Nurani S, Suwarno. 2020. Identification of candidate Fe tolerance loci in rice (Oryza sativa) determined through Genome-Wide Association Study (GWAS). Indones J Agric Sci 21 (1): 17-29.
Vert G, Briat JF, Curir C. 2001. Arabidopsis IRT2 gene encodes a root-periphery iron transporter. Plant J 26: 181-189.
Virmani SS. 1977. Varietal tolerance of rice to iron toxicity in Liberia. Int Rice Res Newsl 2: 4-5.
White RE. 2005. Principles and Practices of Soil Science: The Soil as A Natural Resource. 4th edition. John Wiley and Sons Ltd., Chicester, United Kingdom.
Widjaja-Adhi IPG, Nugroho K, Ardi D, Karim AS. 1992. Sumber daya lahan rawa: Potensi, keterbatasan dan pemanfaatannya. In: Sutjipto P, Syam M (eds). Prosiding Nasional Pengembangan Pertanian Lahan Rawa Pasang Surut dan Lebak. Badan Penelitian dan Pengembangan Pertanian. Departemen Pertanian, Cisarua, Bogor, 3-4 Maret [Indonesia]
Wu LB, Shhadi M, Gregorio G, Matthus E, Becker M, Frei M. 2014. Genetic and physiological analysis of tolerance to acute iron toxicity in rice. Rice 7 (8): 1-12. DOI: 10.1186/s12284-014-0008-3.
Wu LB, Ueda Y, Lai SK, Frei M. 2017. Shoot tolerance mechanisms to iron toxicity in rice (Oryza sativa L.). Plant Cell Environ 40: 570-584. DOI: 10.1111/pce.12733.
Ye Q, Zhang H, Wei H, Zhang Y, Wang B, Xia K, Hou Z, Dai Q, Xu K. 2007. Effect of nitrogen fertilizer on nitrogen use efficiency on yield of rice under different soil condition. Front Agr China 1 (1): 30-36.
Zhang Y, Xu YH, Yi HY, Gong JM. 2012. Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice. Plant J 72: 400-410. DOI: 10.1111/j.1365-313X.2012.05088.x.
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